Non-Coding RNA Search

Pig2-102D18

Sequence:


               
               GAAAAAGTGAGGAAACCTACTTTTAGCACCACTGAAAAGAGTTTGGTTGAACCTAGCAGT
TAGGACCCGGCTTCATTCCCATCGTAGAGGCTTCGTAAGCGGCTTTGAGTCGTGTAATAT
TAGTGTCCTTCAAGTCATAAAAGTAGTTTTAAAATCCTATTGCATGAAGGCGTTTATACA
TTAAAAAACTTAAAGGACAGTTCGAAAGGGCAAGAGGCAATCAGGGCAGTTCTCGGGGGG
TGACAGTGGCTGTTGGAGAGCATTTGCAGTGCAGGTGTCCAGGCTGTACTTTGAGCCTTG
TTCCCCAGCCTTGGGCTCCCTGCCAGGCCACCTTCACTGTGTGGCTTGTGCTGACACTGA
CCTGAGAGGAGCTGTGGCGGGGGGCCTANATCCTGGCCTCAGCACCTCCTGGGAGCCGGC
TTCTATTCCCTTCCCTCTCCTCCACANCCCTCCCCACTCCCAACTTTAGTGCTTAGAGCC
TTCCAGTGCAAGGAGGTAGCCGGCCCAGTGGCTCGGGTTCCAGGCCTGTGCTGGCACATC
ACTCCCCTGGCCACCTTCCTGGCAGGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAGTGAGGAAACCTACTTTTAGCACCACTGAAAAGAGTTTGGTTGAACCTAGCAGT
TAGGACCCGGCTTCATTCCCATCGTAGAGGCTTCGTAAGCGGCTTTGAGTCGTGTAATAT
TAGTGTCCTTCAAGTCATAAAAGTAGTTTTAAAATCCTATTGCATGAAGGCGTTTATACA
TTAAAAAACTTAAAGGACAGTTCGAAAGGGCAAGAGGCAATCAGGGCAGTTCTCGGGGGG
TGACAGTGGCTGTTGGAGAGCATTTGCAGTGCAGGTGTCCAGGCTGTACTTTGAGCCTTG
TTCCCCAGCCTTGGGCTCCCTGCCAGGCCACCTTCACTGTGTGGCTTGTGCTGACACTGA
CCTGAGAGGAGCTGTGGCGGGGGGCCTANATCCTGGCCTCAGCACCTCCTGGGAGCCGGC
TTCTATTCCCTTCCCTCTCCTCCACANCCCTCCCCACTCCCAACTTTAGTGCTTAGAGCC
TTCCAGTGCAAGGAGGTAGCCGGCCCAGTGGCTCGGGTTCCAGGCCTGTGCTGGCACATC
ACTCCCCTGGCCACCTTCCTGGCAGGCTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               376-570, - strand, RNAz p=0.916827

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               376-570, - strand, RNAz p=0.916827

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-570, gnl|bosTau2|chr10 (6317959-6317389)
               

               
               1-570, gnl|canFam2|chr30 (34355228-34356118)
               

               
               1-570, gnl|echTel1|scaffold_302777 (15022-15964)
               

               
               1-570, gnl|hg17|chr15 (65271745-65272878)
               

               
               1-570, gnl|Hg17|chr15 (65272367-65272961)
               

               
               1-570, gnl|loxAfr1|scaffold_43028 (1999-1006)
               

               
               1-570, gnl|mm7|chr9 (63677337-63676575)
               

               
               1-570, gnl|monDom2|scaffold_12 (45176234-45175171)
               

               
               1-570, gnl|oryCun1|scaffold_204411 (13048-13913)
               

               
               1-570, gnl|panTro1|chr16 (65781161-65782293)
               

               
               1-570, gnl|rheMac2|chr7 (45763155-45764237)
               

               
               1-570, gnl|rn3|chr8 (67841890-67841104)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-570, gnl|bosTau2|chr10 (6317959-6317389)
               

               
               1-570, gnl|canFam2|chr30 (34355228-34356118)
               

               
               1-570, gnl|echTel1|scaffold_302777 (15022-15964)
               

               
               1-570, gnl|hg17|chr15 (65271745-65272878)
               

               
               1-570, gnl|Hg17|chr15 (65272367-65272961)
               

               
               1-570, gnl|loxAfr1|scaffold_43028 (1999-1006)
               

               
               1-570, gnl|mm7|chr9 (63677337-63676575)
               

               
               1-570, gnl|monDom2|scaffold_12 (45176234-45175171)
               

               
               1-570, gnl|oryCun1|scaffold_204411 (13048-13913)
               

               
               1-570, gnl|panTro1|chr16 (65781161-65782293)
               

               
               1-570, gnl|rheMac2|chr7 (45763155-45764237)
               

               
               1-570, gnl|rn3|chr8 (67841890-67841104)

	1-570, gnl\|bosTau2\|chr10 (6317959-6317389)
	1-570, gnl\|canFam2\|chr30 (34355228-34356118)
	1-570, gnl\|echTel1\|scaffold_302777 (15022-15964)
	1-570, gnl\|hg17\|chr15 (65271745-65272878)
	1-570, gnl\|Hg17\|chr15 (65272367-65272961)
	1-570, gnl\|loxAfr1\|scaffold_43028 (1999-1006)
	1-570, gnl\|mm7\|chr9 (63677337-63676575)
	1-570, gnl\|monDom2\|scaffold_12 (45176234-45175171)
	1-570, gnl\|oryCun1\|scaffold_204411 (13048-13913)
	1-570, gnl\|panTro1\|chr16 (65781161-65782293)
	1-570, gnl\|rheMac2\|chr7 (45763155-45764237)
	1-570, gnl\|rn3\|chr8 (67841890-67841104)