Non-Coding RNA Search

Pig2-102M24

Sequence:


               
               AGGTTAAGACATGATCATTATTCTGAAGCGTANAAAGGCAGATATTTAACTGTAAGATCA
AAGACATAAATGAAGAGTAGAGAAGAAATAAGATATGTCCAGCTGAGAGGAACAGAATCT
AGATGAAATGTTAGAGAAAATTAACATGAGGCAAACAATGAGGTTGAACTTTCCAGGGGT
GATATCTCTTTTAGATTTGCTCTTGAGGATTGCTCCTTTTTTTTTCTCAATAGAGGATGC
ACTCTAAGCAGCCTTCTGGTATTGCCCTAGAATTTCCTAGATATTTTTTGTGTGTAAGAC
CTGTTGATACTTATTTCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTTAAGACATGATCATTATTCTGAAGCGTANAAAGGCAGATATTTAACTGTAAGATCA
AAGACATAAATGAAGAGTAGAGAAGAAATAAGATATGTCCAGCTGAGAGGAACAGAATCT
AGATGAAATGTTAGAGAAAATTAACATGAGGCAAACAATGAGGTTGAACTTTCCAGGGGT
GATATCTCTTTTAGATTTGCTCTTGAGGATTGCTCCTTTTTTTTTCTCAATAGAGGATGC
ACTCTAAGCAGCCTTCTGGTATTGCCCTAGAATTTCCTAGATATTTTTTGTGTGTAAGAC
CTGTTGATACTTATTTCATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               168-286, + strand, RNAz p=0.807788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-286, + strand, RNAz p=0.807788

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               53-320, gnl|bosTau2|chr5 (40815090-40815351)
               

               
               53-320, gnl|canFam2|chr10 (34870845-34870448)
               

               
               53-320, gnl|dasNov1|scaffold_172439 (172-564)
               

               
               53-320, gnl|echTel1|scaffold_316942 (43968-44325)
               

               
               53-320, gnl|hg17|chr12 (105919099-105919515)
               

               
               53-320, gnl|Hg17|chr12 (105919408-105919149)
               

               
               53-320, gnl|loxAfr1|scaffold_53869 (6024-5667)
               

               
               53-320, gnl|mm7|chr10 (84699457-84699685)
               

               
               53-320, gnl|oryCun1|scaffold_139015 (4398-4012)
               

               
               53-320, gnl|panTro1|chr10 (108428052-108428465)
               

               
               53-320, gnl|rheMac2|chr11 (108093835-108094245)
               

               
               53-320, gnl|rn3|chr7 (20703055-20702733)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-320, gnl|bosTau2|chr5 (40815090-40815351)
               

               
               53-320, gnl|canFam2|chr10 (34870845-34870448)
               

               
               53-320, gnl|dasNov1|scaffold_172439 (172-564)
               

               
               53-320, gnl|echTel1|scaffold_316942 (43968-44325)
               

               
               53-320, gnl|hg17|chr12 (105919099-105919515)
               

               
               53-320, gnl|Hg17|chr12 (105919408-105919149)
               

               
               53-320, gnl|loxAfr1|scaffold_53869 (6024-5667)
               

               
               53-320, gnl|mm7|chr10 (84699457-84699685)
               

               
               53-320, gnl|oryCun1|scaffold_139015 (4398-4012)
               

               
               53-320, gnl|panTro1|chr10 (108428052-108428465)
               

               
               53-320, gnl|rheMac2|chr11 (108093835-108094245)
               

               
               53-320, gnl|rn3|chr7 (20703055-20702733)

	53-320, gnl\|bosTau2\|chr5 (40815090-40815351)
	53-320, gnl\|canFam2\|chr10 (34870845-34870448)
	53-320, gnl\|dasNov1\|scaffold_172439 (172-564)
	53-320, gnl\|echTel1\|scaffold_316942 (43968-44325)
	53-320, gnl\|hg17\|chr12 (105919099-105919515)
	53-320, gnl\|Hg17\|chr12 (105919408-105919149)
	53-320, gnl\|loxAfr1\|scaffold_53869 (6024-5667)
	53-320, gnl\|mm7\|chr10 (84699457-84699685)
	53-320, gnl\|oryCun1\|scaffold_139015 (4398-4012)
	53-320, gnl\|panTro1\|chr10 (108428052-108428465)
	53-320, gnl\|rheMac2\|chr11 (108093835-108094245)
	53-320, gnl\|rn3\|chr7 (20703055-20702733)