Non-Coding RNA Search

Pig2-102P12

Sequence:


               
               GGGGACACCTTGACCTCAGTGTGACACCAACACAGGGATGACCAAGTGTGGGTGACGCCG
AGCAACGAGCGGGTGCTAGNAGGAGGGGCCAACAGCACGGTGACAGTGTCCAAGAACGAC
GGCAGTCTTCACTTCCAGCGGGTGCAGGTCGAGGACGGGGGCGTGTACACCTGCTATGCC
ATGGGGGAGGCTTTCAACGAGACACTGTCTGTGGAGTTGAAAGTGTACAATTTCACCTCG
CACGGACACCACGACACCCTCAACACAGCCTATACCACCCTCGTGGGCTGCATCCTCAGC
GTGGTCCTGGTCCTCATCTACCTGTACCTCACCCCTTGCCGCTGCTGGTGCCGGGGTGTC
GAGAAGCCGTCCAGCCATCAAGGAGACAGCCTCAGCTCTTCCATGCTTAGCACCACACCC
AACCACGATCCTATGGCTGGCGGGGACAAGGATGATGGCTTTGACCGGCGGGTGGCCTTC
CTGGACCCTGCCGGATCCGGGCAAAATGGCAAGCTCAAGCCAGGCAACACCCTGCCGGTG
CCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGACACCTTGACCTCAGTGTGACACCAACACAGGGATGACCAAGTGTGGGTGACGCCG
AGCAACGAGCGGGTGCTAGNAGGAGGGGCCAACAGCACGGTGACAGTGTCCAAGAACGAC
GGCAGTCTTCACTTCCAGCGGGTGCAGGTCGAGGACGGGGGCGTGTACACCTGCTATGCC
ATGGGGGAGGCTTTCAACGAGACACTGTCTGTGGAGTTGAAAGTGTACAATTTCACCTCG
CACGGACACCACGACACCCTCAACACAGCCTATACCACCCTCGTGGGCTGCATCCTCAGC
GTGGTCCTGGTCCTCATCTACCTGTACCTCACCCCTTGCCGCTGCTGGTGCCGGGGTGTC
GAGAAGCCGTCCAGCCATCAAGGAGACAGCCTCAGCTCTTCCATGCTTAGCACCACACCC
AACCACGATCCTATGGCTGGCGGGGACAAGGATGATGGCTTTGACCGGCGGGTGGCCTTC
CTGGACCCTGCCGGATCCGGGCAAAATGGCAAGCTCAAGCCAGGCAACACCCTGCCGGTG
CCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828163|ref|XP_602606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828163|ref|XP_602606.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               63-200, - strand, RNAz p=0.992182
               

               
               114-353, - strand, RNAz p=0.982246
               

               
               321-439, - strand, RNAz p=0.579018
               

               
               431-542, + strand, RNAz p=0.935523

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               63-200, - strand, RNAz p=0.992182
               

               
               114-353, - strand, RNAz p=0.982246
               

               
               321-439, - strand, RNAz p=0.579018
               

               
               431-542, + strand, RNAz p=0.935523

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-542, gnl|bosTau2|chr3 (25955502-25956052)
               

               
               1-542, gnl|canFam2|chr6 (45412464-45411937)
               

               
               1-542, gnl|danRer3|chr8 (17778182-17778692)
               

               
               1-542, gnl|echTel1|scaffold_260855 (2767-3294)
               

               
               1-542, gnl|fr1|chrUn (46045400-46044894)
               

               
               1-542, gnl|galGal2|chr1 (28166062-28166596)
               

               
               1-542, gnl|hg17|chr1 (109762086-109762613)
               

               
               1-542, gnl|Hg17|chr1 (109762730-109762180)
               

               
               1-542, gnl|loxAfr1|scaffold_38714 (19690-20219)
               

               
               1-542, gnl|mm7|chr3 (108006964-108006437)
               

               
               1-542, gnl|Mm7|chr3 (108006321-108006868)
               

               
               1-542, gnl|monDom2|scaffold_0 (7142249-7141721)
               

               
               1-542, gnl|oryCun1|scaffold_208853 (44536-45063)
               

               
               1-542, gnl|panTro1|chr1 (108692596-108693123)
               

               
               1-542, gnl|rheMac2|chr1 (112566249-112566776)
               

               
               1-542, gnl|rn3|chr2 (203716878-203716351)
               

               
               1-542, gnl|tetNig1|chr11 (5947340-5947839)
               

               
               1-542, gnl|xenTro1|scaffold_19 (1992603-1993139)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr3 (25955502-25956052)
               

               
               1-542, gnl|canFam2|chr6 (45412464-45411937)
               

               
               1-542, gnl|danRer3|chr8 (17778182-17778692)
               

               
               1-542, gnl|echTel1|scaffold_260855 (2767-3294)
               

               
               1-542, gnl|fr1|chrUn (46045400-46044894)
               

               
               1-542, gnl|galGal2|chr1 (28166062-28166596)
               

               
               1-542, gnl|hg17|chr1 (109762086-109762613)
               

               
               1-542, gnl|Hg17|chr1 (109762730-109762180)
               

               
               1-542, gnl|loxAfr1|scaffold_38714 (19690-20219)
               

               
               1-542, gnl|mm7|chr3 (108006964-108006437)
               

               
               1-542, gnl|Mm7|chr3 (108006321-108006868)
               

               
               1-542, gnl|monDom2|scaffold_0 (7142249-7141721)
               

               
               1-542, gnl|oryCun1|scaffold_208853 (44536-45063)
               

               
               1-542, gnl|panTro1|chr1 (108692596-108693123)
               

               
               1-542, gnl|rheMac2|chr1 (112566249-112566776)
               

               
               1-542, gnl|rn3|chr2 (203716878-203716351)
               

               
               1-542, gnl|tetNig1|chr11 (5947340-5947839)
               

               
               1-542, gnl|xenTro1|scaffold_19 (1992603-1993139)

	63-200, - strand, RNAz p=0.992182
	114-353, - strand, RNAz p=0.982246
	321-439, - strand, RNAz p=0.579018
	431-542, + strand, RNAz p=0.935523

	1-542, gnl\|bosTau2\|chr3 (25955502-25956052)
	1-542, gnl\|canFam2\|chr6 (45412464-45411937)
	1-542, gnl\|danRer3\|chr8 (17778182-17778692)
	1-542, gnl\|echTel1\|scaffold_260855 (2767-3294)
	1-542, gnl\|fr1\|chrUn (46045400-46044894)
	1-542, gnl\|galGal2\|chr1 (28166062-28166596)
	1-542, gnl\|hg17\|chr1 (109762086-109762613)
	1-542, gnl\|Hg17\|chr1 (109762730-109762180)
	1-542, gnl\|loxAfr1\|scaffold_38714 (19690-20219)
	1-542, gnl\|mm7\|chr3 (108006964-108006437)
	1-542, gnl\|Mm7\|chr3 (108006321-108006868)
	1-542, gnl\|monDom2\|scaffold_0 (7142249-7141721)
	1-542, gnl\|oryCun1\|scaffold_208853 (44536-45063)
	1-542, gnl\|panTro1\|chr1 (108692596-108693123)
	1-542, gnl\|rheMac2\|chr1 (112566249-112566776)
	1-542, gnl\|rn3\|chr2 (203716878-203716351)
	1-542, gnl\|tetNig1\|chr11 (5947340-5947839)
	1-542, gnl\|xenTro1\|scaffold_19 (1992603-1993139)