Non-Coding RNA Search

Pig2-103P21

Sequence:


               
               GCTTCACCTCTGATTCCTGGAAATGTTTTCCAAAGGCTCTGAGGCCTCAGCTCTGGTTCT
GCTCATCCCAGAATGGGCCCTGGGGCCTTGGGCCTGTTGTCAAGCCCCCGCCAGGCTTTT
CACTCACTTTGGAGCTATGTCTCCGGGGTCAAACTGCTTTGTCTTGCTTTCTGAAGGGAG
AAGCAGCAGAAAGTGCTGGCACTCGTGAGTGCAGCAGGCAGAAGATGTTCCAGCCTCCTG
GCAGCCTGCTGGTCCAGCTCCAGGCCCAGGTGGCTGCCGGCTGGATGATTCAGGACAGAA
CTACCAGCATTATCACCTTTTCACAGATGGAAGAAACTGAGACATGGAGTTGCTGGCTCA
GAAGCACACAGCGAGTAACCTGGAAATCCAGGATTTGAACCCAGGCTGCCGGATCTGGAG
CCGCAGTGCTCCTACCCACCACGTCGCTGCCTCTTCTGCTGTCAGTCCGTGGCGCTGTAG
TGGAAGAGGCCCAAGCAGGGGACCCCAGCATTTCTGGCCTGGCACAGCCACAACACCCAC
GGTGTGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCACCTCTGATTCCTGGAAATGTTTTCCAAAGGCTCTGAGGCCTCAGCTCTGGTTCT
GCTCATCCCAGAATGGGCCCTGGGGCCTTGGGCCTGTTGTCAAGCCCCCGCCAGGCTTTT
CACTCACTTTGGAGCTATGTCTCCGGGGTCAAACTGCTTTGTCTTGCTTTCTGAAGGGAG
AAGCAGCAGAAAGTGCTGGCACTCGTGAGTGCAGCAGGCAGAAGATGTTCCAGCCTCCTG
GCAGCCTGCTGGTCCAGCTCCAGGCCCAGGTGGCTGCCGGCTGGATGATTCAGGACAGAA
CTACCAGCATTATCACCTTTTCACAGATGGAAGAAACTGAGACATGGAGTTGCTGGCTCA
GAAGCACACAGCGAGTAACCTGGAAATCCAGGATTTGAACCCAGGCTGCCGGATCTGGAG
CCGCAGTGCTCCTACCCACCACGTCGCTGCCTCTTCTGCTGTCAGTCCGTGGCGCTGTAG
TGGAAGAGGCCCAAGCAGGGGACCCCAGCATTTCTGGCCTGGCACAGCCACAACACCCAC
GGTGTGACCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               3-159, + strand, RNAz p=0.994915
               

               
               18-190, - strand, RNAz p=0.95768

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-159, + strand, RNAz p=0.994915
               

               
               18-190, - strand, RNAz p=0.95768

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-282, gnl|bosTau2|chr4 (49065919-49065660)
               

               
               3-282, gnl|canFam2|chr14 (9814984-9814459)
               

               
               3-282, gnl|dasNov1|scaffold_149792 (861-330)
               

               
               3-282, gnl|hg17|chr7 (129242543-129243071)
               

               
               3-282, gnl|Hg17|chr7 (129242597-129242874)
               

               
               3-282, gnl|loxAfr1|scaffold_10029 (62063-61501)
               

               
               3-282, gnl|mm7|chr6 (30287626-30288117)
               

               
               3-282, gnl|Mm7|chr6 (30287691-30287928)
               

               
               3-282, gnl|monDom2|scaffold_22 (14455255-14454671)
               

               
               3-282, gnl|panTro1|chr6 (131710725-131711253)
               

               
               3-282, gnl|rheMac2|chr3 (167380328-167380855)
               

               
               3-282, gnl|rn3|chr4 (57548495-57549031)
               


               
               301-550, gnl|bosTau2|chr4 (49064821-49064590)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-282, gnl|bosTau2|chr4 (49065919-49065660)
               

               
               3-282, gnl|canFam2|chr14 (9814984-9814459)
               

               
               3-282, gnl|dasNov1|scaffold_149792 (861-330)
               

               
               3-282, gnl|hg17|chr7 (129242543-129243071)
               

               
               3-282, gnl|Hg17|chr7 (129242597-129242874)
               

               
               3-282, gnl|loxAfr1|scaffold_10029 (62063-61501)
               

               
               3-282, gnl|mm7|chr6 (30287626-30288117)
               

               
               3-282, gnl|Mm7|chr6 (30287691-30287928)
               

               
               3-282, gnl|monDom2|scaffold_22 (14455255-14454671)
               

               
               3-282, gnl|panTro1|chr6 (131710725-131711253)
               

               
               3-282, gnl|rheMac2|chr3 (167380328-167380855)
               

               
               3-282, gnl|rn3|chr4 (57548495-57549031)
               


               
               301-550, gnl|bosTau2|chr4 (49064821-49064590)

	3-159, + strand, RNAz p=0.994915
	18-190, - strand, RNAz p=0.95768

	3-282, gnl\|bosTau2\|chr4 (49065919-49065660)
	3-282, gnl\|canFam2\|chr14 (9814984-9814459)
	3-282, gnl\|dasNov1\|scaffold_149792 (861-330)
	3-282, gnl\|hg17\|chr7 (129242543-129243071)
	3-282, gnl\|Hg17\|chr7 (129242597-129242874)
	3-282, gnl\|loxAfr1\|scaffold_10029 (62063-61501)
	3-282, gnl\|mm7\|chr6 (30287626-30288117)
	3-282, gnl\|Mm7\|chr6 (30287691-30287928)
	3-282, gnl\|monDom2\|scaffold_22 (14455255-14454671)
	3-282, gnl\|panTro1\|chr6 (131710725-131711253)
	3-282, gnl\|rheMac2\|chr3 (167380328-167380855)
	3-282, gnl\|rn3\|chr4 (57548495-57549031)

	301-550, gnl\|bosTau2\|chr4 (49064821-49064590)