Non-Coding RNA Search

Pig2-104M23

Sequence:


               
               GACTCTACCTGCAACAGCTCACACGGTGGGCTGGTCACCTTAAGCACCCTCTACAACAAG
ATGCATGGCAACTCCCATGCCAATCTCAACTCTGCCCCACAATCTTGCAGCGACTCTTCC
TTCTGCAGCCACTCGGACCCTGGCGCCTTCTACCTGGACCTGCAACCCTCCCCCGCTGAG
TCTAAGATGTCTTGTGAGTCCCACCACCCTGACAGTGGAGGAAGGGAAGGTGGCTATGGT
TGTCCTCATGCCTCATCTCCTGAGCTTGATGCCAACTGCAACTCCTACCGCCCACACTGT
GAGCCCTGCCCAGCTGTGGCTGACCTCACAGCCTGCTTCCAGAGCCAGGCCCGTCTTGTT
GTGGCCACACAGAATTACTATAAACTTGTCACCTGTGACTTGTCCTCCCAGTCATCCCCA
AGCCCAGCTGGCTCTTCCATCACCAGCTGTTCTGAGGAACACACCAAGATTAGTCCTGCA
CCAGGCCCTGGCCCAGATCCTGGGTCTAGCCAGCCCTCTGAGTATTACCTATTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCTACCTGCAACAGCTCACACGGTGGGCTGGTCACCTTAAGCACCCTCTACAACAAG
ATGCATGGCAACTCCCATGCCAATCTCAACTCTGCCCCACAATCTTGCAGCGACTCTTCC
TTCTGCAGCCACTCGGACCCTGGCGCCTTCTACCTGGACCTGCAACCCTCCCCCGCTGAG
TCTAAGATGTCTTGTGAGTCCCACCACCCTGACAGTGGAGGAAGGGAAGGTGGCTATGGT
TGTCCTCATGCCTCATCTCCTGAGCTTGATGCCAACTGCAACTCCTACCGCCCACACTGT
GAGCCCTGCCCAGCTGTGGCTGACCTCACAGCCTGCTTCCAGAGCCAGGCCCGTCTTGTT
GTGGCCACACAGAATTACTATAAACTTGTCACCTGTGACTTGTCCTCCCAGTCATCCCCA
AGCCCAGCTGGCTCTTCCATCACCAGCTGTTCTGAGGAACACACCAAGATTAGTCCTGCA
CCAGGCCCTGGCCCAGATCCTGGGTCTAGCCAGCCCTCTGAGTATTACCTATTCCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.906627
               

               
               360-536, - strand, RNAz p=0.794851

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.906627
               

               
               360-536, - strand, RNAz p=0.794851

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               414-492, - strand, RNAmicro p=0.9499

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               414-492, - strand, RNAmicro p=0.9499

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-536, gnl|bosTau2|chr8 (28338994-28339529)
               

               
               1-536, gnl|Hg17|chr9 (35537329-35537864)
               

               
               1-536, gnl|Mm7|chr4 (43429338-43429873)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-536, gnl|bosTau2|chr8 (28338994-28339529)
               

               
               1-536, gnl|Hg17|chr9 (35537329-35537864)
               

               
               1-536, gnl|Mm7|chr4 (43429338-43429873)

	1-119, - strand, RNAz p=0.906627
	360-536, - strand, RNAz p=0.794851

	1-536, gnl\|bosTau2\|chr8 (28338994-28339529)
	1-536, gnl\|Hg17\|chr9 (35537329-35537864)
	1-536, gnl\|Mm7\|chr4 (43429338-43429873)