Non-Coding RNA Search

Pig2-105L06

Sequence:


               
               CCGTGTGGGCTACCATCGGGACCAACTCCACTTCAAATCCCTTCTCTCTTTCACTCATCA
TGCAGGGCGGCCCCCAGAGAGGTGCCTCCTTCTCCGATGCCACCTCCANAACAAGTACTG
GCTAATGGAGCTACTGCCACCTCTAAACCCCTCCAGCCACTGGGCTGTATCCCACAGCCA
CCATCACCCAAGGGAACAGGCACTACCCCCACATCTGGAGCCAGCCTGGCCCCAGGGCTA
AGGCATAACTCAGCACCAGGGAGGGTTGGCCCTGCAGAGTACCTTTCCCCAGATATGCAG
CGCCAGCGAAAGACCAAGCGCAAAACCAAAGAGCAGCTGGCTATCATCAAATCATTTTTC
CTACAGTGCCAGTGGGCACGGCGTGAGGATTACCATAAATTAGAGCAGATCACTGGTTTA
CCTCGGCCTGAGATTATTCAGTGGTTTGGTGACACACGCTATGCCTTGAAGCATGGGCAA
CTAAAATGGTTTCGGGACAACGCAGTACCTGGGGCCCCTAGCTTCCAGGATCCAGCAATT
CCCACACCACCACCTTCAACCCGCTCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGTGGGCTACCATCGGGACCAACTCCACTTCAAATCCCTTCTCTCTTTCACTCATCA
TGCAGGGCGGCCCCCAGAGAGGTGCCTCCTTCTCCGATGCCACCTCCANAACAAGTACTG
GCTAATGGAGCTACTGCCACCTCTAAACCCCTCCAGCCACTGGGCTGTATCCCACAGCCA
CCATCACCCAAGGGAACAGGCACTACCCCCACATCTGGAGCCAGCCTGGCCCCAGGGCTA
AGGCATAACTCAGCACCAGGGAGGGTTGGCCCTGCAGAGTACCTTTCCCCAGATATGCAG
CGCCAGCGAAAGACCAAGCGCAAAACCAAAGAGCAGCTGGCTATCATCAAATCATTTTTC
CTACAGTGCCAGTGGGCACGGCGTGAGGATTACCATAAATTAGAGCAGATCACTGGTTTA
CCTCGGCCTGAGATTATTCAGTGGTTTGGTGACACACGCTATGCCTTGAAGCATGGGCAA
CTAAAATGGTTTCGGGACAACGCAGTACCTGGGGCCCCTAGCTTCCAGGATCCAGCAATT
CCCACACCACCACCTTCAACCCGCTCCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56966923|pdb|1WJH|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56966923|pdb|1WJH|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-311, - strand, RNAz p=0.953428

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-311, - strand, RNAz p=0.953428

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               82-570, gnl|bosTau2|chr10 (13829554-13830045)
               

               
               82-570, gnl|Hg17|chr14 (22815436-22814942)
               

               
               82-570, gnl|Mm7|chr14 (49724436-49723945)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-570, gnl|bosTau2|chr10 (13829554-13830045)
               

               
               82-570, gnl|Hg17|chr14 (22815436-22814942)
               

               
               82-570, gnl|Mm7|chr14 (49724436-49723945)

	82-570, gnl\|bosTau2\|chr10 (13829554-13830045)
	82-570, gnl\|Hg17\|chr14 (22815436-22814942)
	82-570, gnl\|Mm7\|chr14 (49724436-49723945)