Non-Coding RNA Search

Pig2-106K24

Sequence:


               
               CCTCTGTCTCCATCCGTGCCCCTGTCCCTCCCCGCTCCCACCTACCCCTTGGGCCCACCC
TCACATGGCATTCTCACACCCTCTCGGCACTGAAATCTTGAGTGTGACTGACCTCACACC
CGCCCATCTCGTGGACTTTGAGTCGGACCGGCAGGGTGTGACGGAAGCCTGCAGGAATGC
TCTTACCGATAGATAAGAATAAAGCATCCTGAGCCATTACAGAAGATCGTTTCCACGCAC
TAAAAGCCATTACTTGATCCATTTGTTTCCCTGCCTCCCCGCTCCTCTGGGAGATGGATG
CTGGGGGAAGGTGGCCTGAAGGTTTGCACCTGGGATGGTAGCCTGGGCAGATTTGGGCAT
TACCCTCCGGCTGCCCTTCCAAATAAGCTGCCTTGTTTAACCAAAGGGGCTCCATGAGAG
CGATGGAGGGAAGCAGGTGCCTGTGGGTTGAGGTCTGGGTGGTTAGGGCATGACACCGGT
GAAACAAAGACCCCCACCACCCACTACGGTGTACAGTTGCACAAATATTTGCACACATAA
CTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTGTCTCCATCCGTGCCCCTGTCCCTCCCCGCTCCCACCTACCCCTTGGGCCCACCC
TCACATGGCATTCTCACACCCTCTCGGCACTGAAATCTTGAGTGTGACTGACCTCACACC
CGCCCATCTCGTGGACTTTGAGTCGGACCGGCAGGGTGTGACGGAAGCCTGCAGGAATGC
TCTTACCGATAGATAAGAATAAAGCATCCTGAGCCATTACAGAAGATCGTTTCCACGCAC
TAAAAGCCATTACTTGATCCATTTGTTTCCCTGCCTCCCCGCTCCTCTGGGAGATGGATG
CTGGGGGAAGGTGGCCTGAAGGTTTGCACCTGGGATGGTAGCCTGGGCAGATTTGGGCAT
TACCCTCCGGCTGCCCTTCCAAATAAGCTGCCTTGTTTAACCAAAGGGGCTCCATGAGAG
CGATGGAGGGAAGCAGGTGCCTGTGGGTTGAGGTCTGGGTGGTTAGGGCATGACACCGGT
GAAACAAAGACCCCCACCACCCACTACGGTGTACAGTTGCACAAATATTTGCACACATAA
CTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               435-543, - strand, RNAz p=0.994309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               435-543, - strand, RNAz p=0.994309

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               2-543, gnl|bosTau2|chr3 (29969093-29968535)
               

               
               2-543, gnl|canFam2|chr6 (44475889-44474708)
               

               
               2-543, gnl|dasNov1|scaffold_21560 (47468-46330)
               

               
               2-543, gnl|echTel1|scaffold_322291 (13971-12829)
               

               
               2-543, gnl|hg17|chr1 (110851000-110852152)
               

               
               2-543, gnl|Hg17|chr1 (110852179-110851621)
               

               
               2-543, gnl|loxAfr1|scaffold_152878 (1186-38)
               

               
               2-543, gnl|mm7|chr3 (106930581-106929497)
               

               
               2-543, gnl|Mm7|chr3 (106929464-106929998)
               

               
               2-543, gnl|monDom2|scaffold_0 (5383002-5381826)
               

               
               2-543, gnl|oryCun1|scaffold_210655 (117409-118527)
               

               
               2-543, gnl|panTro1|chr1 (111430769-111429615)
               

               
               2-543, gnl|rheMac2|chr1 (113657472-113658628)
               

               
               2-543, gnl|rn3|chr2 (202533234-202532144)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-543, gnl|bosTau2|chr3 (29969093-29968535)
               

               
               2-543, gnl|canFam2|chr6 (44475889-44474708)
               

               
               2-543, gnl|dasNov1|scaffold_21560 (47468-46330)
               

               
               2-543, gnl|echTel1|scaffold_322291 (13971-12829)
               

               
               2-543, gnl|hg17|chr1 (110851000-110852152)
               

               
               2-543, gnl|Hg17|chr1 (110852179-110851621)
               

               
               2-543, gnl|loxAfr1|scaffold_152878 (1186-38)
               

               
               2-543, gnl|mm7|chr3 (106930581-106929497)
               

               
               2-543, gnl|Mm7|chr3 (106929464-106929998)
               

               
               2-543, gnl|monDom2|scaffold_0 (5383002-5381826)
               

               
               2-543, gnl|oryCun1|scaffold_210655 (117409-118527)
               

               
               2-543, gnl|panTro1|chr1 (111430769-111429615)
               

               
               2-543, gnl|rheMac2|chr1 (113657472-113658628)
               

               
               2-543, gnl|rn3|chr2 (202533234-202532144)

	2-543, gnl\|bosTau2\|chr3 (29969093-29968535)
	2-543, gnl\|canFam2\|chr6 (44475889-44474708)
	2-543, gnl\|dasNov1\|scaffold_21560 (47468-46330)
	2-543, gnl\|echTel1\|scaffold_322291 (13971-12829)
	2-543, gnl\|hg17\|chr1 (110851000-110852152)
	2-543, gnl\|Hg17\|chr1 (110852179-110851621)
	2-543, gnl\|loxAfr1\|scaffold_152878 (1186-38)
	2-543, gnl\|mm7\|chr3 (106930581-106929497)
	2-543, gnl\|Mm7\|chr3 (106929464-106929998)
	2-543, gnl\|monDom2\|scaffold_0 (5383002-5381826)
	2-543, gnl\|oryCun1\|scaffold_210655 (117409-118527)
	2-543, gnl\|panTro1\|chr1 (111430769-111429615)
	2-543, gnl\|rheMac2\|chr1 (113657472-113658628)
	2-543, gnl\|rn3\|chr2 (202533234-202532144)