Non-Coding RNA Search

Pig2-106M23

Sequence:


               
               ATTTTGTATCCTGGTGGGGGGGGAGGAGAACAACCAGGGACTTGGCTGCTTAACCCTTGG
CATGCCTGCCTCCAGGAGTTACGACACAGCTGAAAAATCCTGAAAGCAGGAAGGCGAAGA
ACAACCGGGCTCTCAAGGTGGTTTTACTTCCAGGTTCACAGAGTCTGGTCCCGTGGCGGT
GCCTCCCGCCCAGCAACCTTTCTGCAGTGCTCCCTAAGCGGTGCAGGGACACATCCCTCC
TCCCCATTTTTATGCACTTTTTTTTGCCTCTCCCTTTGATATGTGTCCACCGAGCTCAAG
AGAGGTTTAAGTGATGAAATATTATCACCCACATGGGTTTGCGTGGGACTTTCTTAGTGA
ATTACTCAGGCAGAGCAGGCTGTGATACAAGCCTTGCTCACAAGCCTCCGGAGGGAAAAA
TAGCACAGAGGATGAAAAGAATATTATCAGAGAGTAGGGAATGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGTATCCTGGTGGGGGGGGAGGAGAACAACCAGGGACTTGGCTGCTTAACCCTTGG
CATGCCTGCCTCCAGGAGTTACGACACAGCTGAAAAATCCTGAAAGCAGGAAGGCGAAGA
ACAACCGGGCTCTCAAGGTGGTTTTACTTCCAGGTTCACAGAGTCTGGTCCCGTGGCGGT
GCCTCCCGCCCAGCAACCTTTCTGCAGTGCTCCCTAAGCGGTGCAGGGACACATCCCTCC
TCCCCATTTTTATGCACTTTTTTTTGCCTCTCCCTTTGATATGTGTCCACCGAGCTCAAG
AGAGGTTTAAGTGATGAAATATTATCACCCACATGGGTTTGCGTGGGACTTTCTTAGTGA
ATTACTCAGGCAGAGCAGGCTGTGATACAAGCCTTGCTCACAAGCCTCCGGAGGGAAAAA
TAGCACAGAGGATGAAAAGAATATTATCAGAGAGTAGGGAATGAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-467, + strand, RNAz p=0.926579

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-467, + strand, RNAz p=0.926579

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               294-360, + strand, RNAmicro p=0.985325

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               294-360, + strand, RNAmicro p=0.985325

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-467, gnl|bosTau2|chr4 (46336876-46336405)
               

               
               1-467, gnl|canFam2|chr18 (11264739-11263896)
               

               
               1-467, gnl|dasNov1|scaffold_135019 (4909-4123)
               

               
               1-467, gnl|echTel1|scaffold_313302 (11520-10701)
               

               
               1-467, gnl|hg17|chr7 (41507116-41507944)
               

               
               1-467, gnl|Hg17|chr7 (41507907-41507447)
               

               
               1-467, gnl|loxAfr1|scaffold_3382 (64122-64955)
               

               
               1-467, gnl|mm7|chr13 (15390547-15389772)
               

               
               1-467, gnl|Mm7|chr13 (15389819-15390224)
               

               
               1-467, gnl|oryCun1|scaffold_193156 (145747-144915)
               

               
               1-467, gnl|panTro1|chr6 (42739846-42739018)
               

               
               1-467, gnl|rheMac2|chr3 (84635338-84634519)
               

               
               1-467, gnl|rn3|chr17 (57251768-57252543)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-467, gnl|bosTau2|chr4 (46336876-46336405)
               

               
               1-467, gnl|canFam2|chr18 (11264739-11263896)
               

               
               1-467, gnl|dasNov1|scaffold_135019 (4909-4123)
               

               
               1-467, gnl|echTel1|scaffold_313302 (11520-10701)
               

               
               1-467, gnl|hg17|chr7 (41507116-41507944)
               

               
               1-467, gnl|Hg17|chr7 (41507907-41507447)
               

               
               1-467, gnl|loxAfr1|scaffold_3382 (64122-64955)
               

               
               1-467, gnl|mm7|chr13 (15390547-15389772)
               

               
               1-467, gnl|Mm7|chr13 (15389819-15390224)
               

               
               1-467, gnl|oryCun1|scaffold_193156 (145747-144915)
               

               
               1-467, gnl|panTro1|chr6 (42739846-42739018)
               

               
               1-467, gnl|rheMac2|chr3 (84635338-84634519)
               

               
               1-467, gnl|rn3|chr17 (57251768-57252543)

	1-467, gnl\|bosTau2\|chr4 (46336876-46336405)
	1-467, gnl\|canFam2\|chr18 (11264739-11263896)
	1-467, gnl\|dasNov1\|scaffold_135019 (4909-4123)
	1-467, gnl\|echTel1\|scaffold_313302 (11520-10701)
	1-467, gnl\|hg17\|chr7 (41507116-41507944)
	1-467, gnl\|Hg17\|chr7 (41507907-41507447)
	1-467, gnl\|loxAfr1\|scaffold_3382 (64122-64955)
	1-467, gnl\|mm7\|chr13 (15390547-15389772)
	1-467, gnl\|Mm7\|chr13 (15389819-15390224)
	1-467, gnl\|oryCun1\|scaffold_193156 (145747-144915)
	1-467, gnl\|panTro1\|chr6 (42739846-42739018)
	1-467, gnl\|rheMac2\|chr3 (84635338-84634519)
	1-467, gnl\|rn3\|chr17 (57251768-57252543)