Non-Coding RNA Search

Pig2-106M24

Sequence:


               
               CACGAATGCTCTAACCGGATAGATAAAGAATAAAGCATGCCTGGAGCCATTACAGAAGAT
CATTTCCACGCACTAAAAGCCATTACTTGATCCATTTGTTTCCCTGCCTCCCCGCTCCTC
TGGGAGATGGATGCTGGGGGAAGGTGGCCTGAAGGTTTGCACCTGGGATGGTAGCCTGGG
CAGATTTGGGCATTACCCTCCGGCTGCCCTTCCAAATAAGCTGCCTTGTTTAACCAAAGG
GGCTCCATGAGAGCGATGGAGGGAAGCAGGTGCCTGTGGGTTGAGGTCTGGGTGGTTAGG
GCATGACACCGGTGAAACAAAGACCCCCACCACCCACTACGGTGTACAGTTGCACAAATA
TTTGCACACATAACTGGGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAATGCTCTAACCGGATAGATAAAGAATAAAGCATGCCTGGAGCCATTACAGAAGAT
CATTTCCACGCACTAAAAGCCATTACTTGATCCATTTGTTTCCCTGCCTCCCCGCTCCTC
TGGGAGATGGATGCTGGGGGAAGGTGGCCTGAAGGTTTGCACCTGGGATGGTAGCCTGGG
CAGATTTGGGCATTACCCTCCGGCTGCCCTTCCAAATAAGCTGCCTTGTTTAACCAAAGG
GGCTCCATGAGAGCGATGGAGGGAAGCAGGTGCCTGTGGGTTGAGGTCTGGGTGGTTAGG
GCATGACACCGGTGAAACAAAGACCCCCACCACCCACTACGGTGTACAGTTGCACAAATA
TTTGCACACATAACTGGGGAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               278-381, - strand, RNAz p=0.985865

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-381, - strand, RNAz p=0.985865

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-381, gnl|bosTau2|chr3 (29968922-29968530)
               

               
               1-381, gnl|canFam2|chr6 (44475889-44474708)
               

               
               1-381, gnl|dasNov1|scaffold_21560 (47468-46330)
               

               
               1-381, gnl|echTel1|scaffold_322291 (13971-12829)
               

               
               1-381, gnl|hg17|chr1 (110851000-110852152)
               

               
               1-381, gnl|Hg17|chr1 (110852012-110851616)
               

               
               1-381, gnl|loxAfr1|scaffold_152878 (1186-38)
               

               
               1-381, gnl|mm7|chr3 (106930581-106929497)
               

               
               1-381, gnl|Mm7|chr3 (106929636-106930003)
               

               
               1-381, gnl|monDom2|scaffold_0 (5383002-5381826)
               

               
               1-381, gnl|oryCun1|scaffold_210655 (117409-118527)
               

               
               1-381, gnl|panTro1|chr1 (111430769-111429615)
               

               
               1-381, gnl|rheMac2|chr1 (113657472-113658628)
               

               
               1-381, gnl|rn3|chr2 (202533234-202532144)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-381, gnl|bosTau2|chr3 (29968922-29968530)
               

               
               1-381, gnl|canFam2|chr6 (44475889-44474708)
               

               
               1-381, gnl|dasNov1|scaffold_21560 (47468-46330)
               

               
               1-381, gnl|echTel1|scaffold_322291 (13971-12829)
               

               
               1-381, gnl|hg17|chr1 (110851000-110852152)
               

               
               1-381, gnl|Hg17|chr1 (110852012-110851616)
               

               
               1-381, gnl|loxAfr1|scaffold_152878 (1186-38)
               

               
               1-381, gnl|mm7|chr3 (106930581-106929497)
               

               
               1-381, gnl|Mm7|chr3 (106929636-106930003)
               

               
               1-381, gnl|monDom2|scaffold_0 (5383002-5381826)
               

               
               1-381, gnl|oryCun1|scaffold_210655 (117409-118527)
               

               
               1-381, gnl|panTro1|chr1 (111430769-111429615)
               

               
               1-381, gnl|rheMac2|chr1 (113657472-113658628)
               

               
               1-381, gnl|rn3|chr2 (202533234-202532144)

	1-381, gnl\|bosTau2\|chr3 (29968922-29968530)
	1-381, gnl\|canFam2\|chr6 (44475889-44474708)
	1-381, gnl\|dasNov1\|scaffold_21560 (47468-46330)
	1-381, gnl\|echTel1\|scaffold_322291 (13971-12829)
	1-381, gnl\|hg17\|chr1 (110851000-110852152)
	1-381, gnl\|Hg17\|chr1 (110852012-110851616)
	1-381, gnl\|loxAfr1\|scaffold_152878 (1186-38)
	1-381, gnl\|mm7\|chr3 (106930581-106929497)
	1-381, gnl\|Mm7\|chr3 (106929636-106930003)
	1-381, gnl\|monDom2\|scaffold_0 (5383002-5381826)
	1-381, gnl\|oryCun1\|scaffold_210655 (117409-118527)
	1-381, gnl\|panTro1\|chr1 (111430769-111429615)
	1-381, gnl\|rheMac2\|chr1 (113657472-113658628)
	1-381, gnl\|rn3\|chr2 (202533234-202532144)