Non-Coding RNA Search

Pig2-107J12

Sequence:


               
               CAGCAACAGTTTGGTCTGCATTTGTTAGAAGTTTAACTCCTAACAATCCAAAGACCTATT
TAACAATTGGTGCATAAATGAAAGTAGTACTGTATTACTTGAAACTGTTTAAGTACAAGT
TGAACAAAAAATATGAAAAGGTATATTTGCTNTCTCGGGAAAGCAAAGAAGCTGCTTTAA
AAAAAAAAATAAAAGGGGGACTAAAAATTTGTTTTGTATAAAGAGGTTAGCCCTGCGCAC
GTAGGACTGAATTCAGTAATAGCCCTATACACTGCCGTTTAGTGGATAGGTTATTGTACT
TCCATTTACACTCTGGGCACTTGTGTTATATTGTTCTGTTACATAACTTTTTTAAAAAAA
TAAAAAACCCTGTTTTGTTGATCATATATGCATTAAAAAGTATTATCTTTATCAACATTT
GCTGCTACTGTGTTAACATTTTTTTTTTGTTTGTTTTGCTTGCCATGAATTTTCAACTTC
TACCACCCAGTGAATTGATTTATAAATTGCTATGCTTTGCTGTTTTTCTGGGGCTGGGGA
ACTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAACAGTTTGGTCTGCATTTGTTAGAAGTTTAACTCCTAACAATCCAAAGACCTATT
TAACAATTGGTGCATAAATGAAAGTAGTACTGTATTACTTGAAACTGTTTAAGTACAAGT
TGAACAAAAAATATGAAAAGGTATATTTGCTNTCTCGGGAAAGCAAAGAAGCTGCTTTAA
AAAAAAAAATAAAAGGGGGACTAAAAATTTGTTTTGTATAAAGAGGTTAGCCCTGCGCAC
GTAGGACTGAATTCAGTAATAGCCCTATACACTGCCGTTTAGTGGATAGGTTATTGTACT
TCCATTTACACTCTGGGCACTTGTGTTATATTGTTCTGTTACATAACTTTTTTAAAAAAA
TAAAAAACCCTGTTTTGTTGATCATATATGCATTAAAAAGTATTATCTTTATCAACATTT
GCTGCTACTGTGTTAACATTTTTTTTTTGTTTGTTTTGCTTGCCATGAATTTTCAACTTC
TACCACCCAGTGAATTGATTTATAAATTGCTATGCTTTGCTGTTTTTCTGGGGCTGGGGA
ACTTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-279, + strand, RNAz p=0.915468

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-279, + strand, RNAz p=0.915468

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-546, gnl|bosTau2|chr28 (18646740-18646209)
               

               
               1-546, gnl|Hg17|chr8 (77940318-77940833)
               

               
               1-546, gnl|Mm7|chr3 (5419833-5420354)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr28 (18646740-18646209)
               

               
               1-546, gnl|Hg17|chr8 (77940318-77940833)
               

               
               1-546, gnl|Mm7|chr3 (5419833-5420354)

	1-546, gnl\|bosTau2\|chr28 (18646740-18646209)
	1-546, gnl\|Hg17\|chr8 (77940318-77940833)
	1-546, gnl\|Mm7\|chr3 (5419833-5420354)