Non-Coding RNA Search

Pig2-107M21

Sequence:


               
               GTGAGAAGGAGCAGTTCTTTATCTCTGACACCTCAGGTAGAAATCAGGGGGAGCCACATG
TTCCCTGACCACAGGGGAAGCCCGTGGCTGGGTCATTCATCACTCTCTCTTGTGATCAGA
GAGTATTCAAAGTTTGTGAGCACATGTGTGTGCTGAGGGTAAAGAGGGTGGAAGGAAGGC
AGAGATTACTTCAAAAGATTATTAGAAATAGGGGCTGTACCTATTTTGTGGGAATAGAGA
GAAAGGTCCAAGTCCTTGGACCATCAATGGGGAAAAACTCATGAGCAGGAAGAGAGGTCA
AGAGTACTCTGGGTGGGTGAACACAGGACCAAAGGGATGATCCAAGCACCAGCCTGACTG
TCATCTGAGGGGAGCCCATGAACAGCGGCAGCTGGATCAGGTGAGGTGTTCACCATCGCT
CCTGGGAGGAGGCTTCTGGGAACCCTGGTTCCCTAGCGCAGGTCCATTGTCACCTGATGG
GAGAACCTGGGTCCAGGAGATCCCGGGTCTGCCCACCAGCTGCACGGGCCCCCTTGAAGA
GCTGTGGAGATACTCCTTTCTCACATGGGGCCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGAAGGAGCAGTTCTTTATCTCTGACACCTCAGGTAGAAATCAGGGGGAGCCACATG
TTCCCTGACCACAGGGGAAGCCCGTGGCTGGGTCATTCATCACTCTCTCTTGTGATCAGA
GAGTATTCAAAGTTTGTGAGCACATGTGTGTGCTGAGGGTAAAGAGGGTGGAAGGAAGGC
AGAGATTACTTCAAAAGATTATTAGAAATAGGGGCTGTACCTATTTTGTGGGAATAGAGA
GAAAGGTCCAAGTCCTTGGACCATCAATGGGGAAAAACTCATGAGCAGGAAGAGAGGTCA
AGAGTACTCTGGGTGGGTGAACACAGGACCAAAGGGATGATCCAAGCACCAGCCTGACTG
TCATCTGAGGGGAGCCCATGAACAGCGGCAGCTGGATCAGGTGAGGTGTTCACCATCGCT
CCTGGGAGGAGGCTTCTGGGAACCCTGGTTCCCTAGCGCAGGTCCATTGTCACCTGATGG
GAGAACCTGGGTCCAGGAGATCCCGGGTCTGCCCACCAGCTGCACGGGCCCCCTTGAAGA
GCTGTGGAGATACTCCTTTCTCACATGGGGCCCCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               186-577, - strand, RNAz p=0.999996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-577, - strand, RNAz p=0.999996

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               390-577, 1235803 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN285840.1|), 
blast E-value=0, identity=96.83% 
               

               
               303-292, 1241419 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN287224.1|), 
blast E-value=0, identity=99.07% 
               

               
               308-577, 1367427 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534470.1|), 
blast E-value=0, identity=97.42% 
               

               
               186-498, LB01113.CR_H24 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DV836637.1|), 
blast E-value=0, identity=100% 
               

               
               186-577, LB02528.CR_N20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV875921.1|), 
blast E-value=0, identity=100% 
               

               
               303-292, LB02530.CR_G03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV877944.1|), 
blast E-value=0, identity=99.07%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               390-577, 1235803 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN285840.1|), 
blast E-value=0, identity=96.83% 
               

               
               303-292, 1241419 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN287224.1|), 
blast E-value=0, identity=99.07% 
               

               
               308-577, 1367427 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534470.1|), 
blast E-value=0, identity=97.42% 
               

               
               186-498, LB01113.CR_H24 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb|DV836637.1|), 
blast E-value=0, identity=100% 
               

               
               186-577, LB02528.CR_N20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV875921.1|), 
blast E-value=0, identity=100% 
               

               
               303-292, LB02530.CR_G03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV877944.1|), 
blast E-value=0, identity=99.07%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-577, gnl|bosTau2|chr26 (7742150-7741571)
               

               
               1-577, gnl|Hg17|chr10 (98095251-98093580)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-577, gnl|bosTau2|chr26 (7742150-7741571)
               

               
               1-577, gnl|Hg17|chr10 (98095251-98093580)

	390-577, 1235803 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN285840.1\|), blast E-value=0, identity=96.83%
	303-292, 1241419 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN287224.1\|), blast E-value=0, identity=99.07%
	308-577, 1367427 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN534470.1\|), blast E-value=0, identity=97.42%
	186-498, LB01113.CR_H24 GC_BGC-11 Bos taurus cDNA clone IMAGE (gb\|DV836637.1\|), blast E-value=0, identity=100%
	186-577, LB02528.CR_N20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV875921.1\|), blast E-value=0, identity=100%
	303-292, LB02530.CR_G03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV877944.1\|), blast E-value=0, identity=99.07%

	1-577, gnl\|bosTau2\|chr26 (7742150-7741571)
	1-577, gnl\|Hg17\|chr10 (98095251-98093580)