Non-Coding RNA Search

Pig2-108B21

Sequence:


               
               TTTACTTAGCATTTTGTAACTTGAATAACTTTACCAAATGAATTCCTTTTGGTAGTTTGT
AATGAGTTCTTCCAACTGTTGCATTTTGCTTGGTACTTTACATCTGTAAAGGTGAAAGAG
AAGTAATTTTTCTGTATTATGCCAACGTAATTTTATGTAATAAAATCATCCATTTTTACT
T

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACTTAGCATTTTGTAACTTGAATAACTTTACCAAATGAATTCCTTTTGGTAGTTTGT
AATGAGTTCTTCCAACTGTTGCATTTTGCTTGGTACTTTACATCTGTAAAGGTGAAAGAG
AAGTAATTTTTCTGTATTATGCCAACGTAATTTTATGTAATAAAATCATCCATTTTTACT
T

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               70-168, + strand, RNAz p=0.774689
               

               
               71-181, - strand, RNAz p=0.93392

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-168, + strand, RNAz p=0.774689
               

               
               71-181, - strand, RNAz p=0.93392

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-181, gnl|bosTau2|chr14 (45721840-45722020)
               

               
               1-181, gnl|canFam2|chr29 (38991538-38991333)
               

               
               1-181, gnl|dasNov1|scaffold_170370 (35264-35485)
               

               
               1-181, gnl|echTel1|scaffold_30644 (4916-5176)
               

               
               1-181, gnl|hg17|chr16 (29873851-29874116)
               

               
               1-181, gnl|Hg17|chr8 (91705132-91704950)
               

               
               1-181, gnl|loxAfr1|scaffold_20525 (3270-3052)
               

               
               1-181, gnl|mm7|chr4 (15212296-15212483)
               

               
               1-181, gnl|Mm7|chr4 (15212305-15212484)
               

               
               1-181, gnl|oryCun1|scaffold_199504 (20838-20604)
               

               
               1-181, gnl|panTro1|chr18 (30634868-30635136)
               

               
               1-181, gnl|rheMac2|chr20 (27919269-27919534)
               

               
               1-181, gnl|rn3|chr5 (29805699-29805886)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-181, gnl|bosTau2|chr14 (45721840-45722020)
               

               
               1-181, gnl|canFam2|chr29 (38991538-38991333)
               

               
               1-181, gnl|dasNov1|scaffold_170370 (35264-35485)
               

               
               1-181, gnl|echTel1|scaffold_30644 (4916-5176)
               

               
               1-181, gnl|hg17|chr16 (29873851-29874116)
               

               
               1-181, gnl|Hg17|chr8 (91705132-91704950)
               

               
               1-181, gnl|loxAfr1|scaffold_20525 (3270-3052)
               

               
               1-181, gnl|mm7|chr4 (15212296-15212483)
               

               
               1-181, gnl|Mm7|chr4 (15212305-15212484)
               

               
               1-181, gnl|oryCun1|scaffold_199504 (20838-20604)
               

               
               1-181, gnl|panTro1|chr18 (30634868-30635136)
               

               
               1-181, gnl|rheMac2|chr20 (27919269-27919534)
               

               
               1-181, gnl|rn3|chr5 (29805699-29805886)

	70-168, + strand, RNAz p=0.774689
	71-181, - strand, RNAz p=0.93392

	1-181, gnl\|bosTau2\|chr14 (45721840-45722020)
	1-181, gnl\|canFam2\|chr29 (38991538-38991333)
	1-181, gnl\|dasNov1\|scaffold_170370 (35264-35485)
	1-181, gnl\|echTel1\|scaffold_30644 (4916-5176)
	1-181, gnl\|hg17\|chr16 (29873851-29874116)
	1-181, gnl\|Hg17\|chr8 (91705132-91704950)
	1-181, gnl\|loxAfr1\|scaffold_20525 (3270-3052)
	1-181, gnl\|mm7\|chr4 (15212296-15212483)
	1-181, gnl\|Mm7\|chr4 (15212305-15212484)
	1-181, gnl\|oryCun1\|scaffold_199504 (20838-20604)
	1-181, gnl\|panTro1\|chr18 (30634868-30635136)
	1-181, gnl\|rheMac2\|chr20 (27919269-27919534)
	1-181, gnl\|rn3\|chr5 (29805699-29805886)