Non-Coding RNA Search

Pig2-108E07

Sequence:


               
               GCACAGCCCTGGGGGCTGGGCTGGGCAGGGGTTCGCACGCTCTTTCCACCTGCCCGGCTG
CCAGCCCACAGGCTGAACACACCCCCAGGCCCAGGGACCCAGCCTGAGAGGTGCCTTTTC
CTCCAGGGCAGCTCCCAGGCTTCCAGACATGAGCTCATCCAGCTGCTCGTGCCAGAAAGG
GAGGGACTGAGGGGGAGGCAGGCCAGGCGGCCCAGACTGGGCACCAAAGGCCCCTAGGGC
AGTGGAGGGGCACTGCTGCTGAGGACTTGGGTGGGACAGGCCAGCGGAGGGTCAGCTAGG
GTGGGGATGGAGACGGGCCCCGTGCCCTGGGCCCTGGTGCAGAGTTGCAGGTGCTGGGCC
AACCTCGGTCACTTGCCTGCTGGGTGACTTTGGGCAAATCCCTTGCCCTGGACGGCCTTC
AGGTCCCTGACTAGCAGTGGGTGCCTGGGTCCTCGGCACTGACAGGACCCTGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGCCCTGGGGGCTGGGCTGGGCAGGGGTTCGCACGCTCTTTCCACCTGCCCGGCTG
CCAGCCCACAGGCTGAACACACCCCCAGGCCCAGGGACCCAGCCTGAGAGGTGCCTTTTC
CTCCAGGGCAGCTCCCAGGCTTCCAGACATGAGCTCATCCAGCTGCTCGTGCCAGAAAGG
GAGGGACTGAGGGGGAGGCAGGCCAGGCGGCCCAGACTGGGCACCAAAGGCCCCTAGGGC
AGTGGAGGGGCACTGCTGCTGAGGACTTGGGTGGGACAGGCCAGCGGAGGGTCAGCTAGG
GTGGGGATGGAGACGGGCCCCGTGCCCTGGGCCCTGGTGCAGAGTTGCAGGTGCTGGGCC
AACCTCGGTCACTTGCCTGCTGGGTGACTTTGGGCAAATCCCTTGCCCTGGACGGCCTTC
AGGTCCCTGACTAGCAGTGGGTGCCTGGGTCCTCGGCACTGACAGGACCCTGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-232, + strand, RNAz p=0.998631

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-232, + strand, RNAz p=0.998631

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               4-79, + strand, RNAmicro p=0.956923

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               4-79, + strand, RNAmicro p=0.956923

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-282, gnl|bosTau2|chr7 (39233711-39233993)
               

               
               2-282, gnl|Hg17|chr5 (149986745-149987027)
               

               
               2-282, gnl|Mm7|chr18 (61011754-61011507)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-282, gnl|bosTau2|chr7 (39233711-39233993)
               

               
               2-282, gnl|Hg17|chr5 (149986745-149987027)
               

               
               2-282, gnl|Mm7|chr18 (61011754-61011507)

	2-282, gnl\|bosTau2\|chr7 (39233711-39233993)
	2-282, gnl\|Hg17\|chr5 (149986745-149987027)
	2-282, gnl\|Mm7\|chr18 (61011754-61011507)