Non-Coding RNA Search

Pig2-108E19

Sequence:


               
               TACCCCCACAGCTTTTTGTATGAGCCATTTTGTATAAATTATTTATATTTAATATTATTC
CCTGCTTTGTCAGGGGCAGGCACCAGGCCCTCCAGGGACCTTCCTCCTCCCTCAGCCTGG
GGTGGAGGCTCTTGGGCGCTGCAAGGCCAACCCCTCTGGAATCTTAACCCCACAGAGAGC
CAAGTAGCTGAAACCTAGAGCCACCAGGAGCCCCTTTTTTGTCCTGTGTCTTGGCTTTGG
AACATCGGCGCCTCCCTGTTAGCCGAGAGCAAGGGCAGAACGTTGGCAGCCCGGAGTGGG
AAGGTCTGGGAGAGGCCAGAGGACTCCTCCACGCAGAAGCAGGAGAGCTGGGCCTCTGAC
ATGGTGCACCTCAATAAACCGGGCTTTCTGGTTCCCCGACTCTGCTTCCTGGGAGCCTGG
GGGGCAGGCCCGGCACCCTCGGCCAAACTGCTGGGACACACACTGTGGGCAGTCTGCCCT
TAGGGTTTGTGGGGGAAGTTCTGCTGTTTCTCCAACTGTTCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCCCCACAGCTTTTTGTATGAGCCATTTTGTATAAATTATTTATATTTAATATTATTC
CCTGCTTTGTCAGGGGCAGGCACCAGGCCCTCCAGGGACCTTCCTCCTCCCTCAGCCTGG
GGTGGAGGCTCTTGGGCGCTGCAAGGCCAACCCCTCTGGAATCTTAACCCCACAGAGAGC
CAAGTAGCTGAAACCTAGAGCCACCAGGAGCCCCTTTTTTGTCCTGTGTCTTGGCTTTGG
AACATCGGCGCCTCCCTGTTAGCCGAGAGCAAGGGCAGAACGTTGGCAGCCCGGAGTGGG
AAGGTCTGGGAGAGGCCAGAGGACTCCTCCACGCAGAAGCAGGAGAGCTGGGCCTCTGAC
ATGGTGCACCTCAATAAACCGGGCTTTCTGGTTCCCCGACTCTGCTTCCTGGGAGCCTGG
GGGGCAGGCCCGGCACCCTCGGCCAAACTGCTGGGACACACACTGTGGGCAGTCTGCCCT
TAGGGTTTGTGGGGGAAGTTCTGCTGTTTCTCCAACTGTTCATCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-147, - strand, RNAz p=0.982053
               

               
               267-376, + strand, RNAz p=0.506232

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-147, - strand, RNAz p=0.982053
               

               
               267-376, + strand, RNAz p=0.506232

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_032459, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032459, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-525, gnl|bosTau2|chr10 (13771834-13772357)
               

               
               1-525, gnl|Hg17|chr14 (22896111-22895576)
               

               
               1-525, gnl|Mm7|chr14 (49783676-49783227)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-525, gnl|bosTau2|chr10 (13771834-13772357)
               

               
               1-525, gnl|Hg17|chr14 (22896111-22895576)
               

               
               1-525, gnl|Mm7|chr14 (49783676-49783227)

	1-147, - strand, RNAz p=0.982053
	267-376, + strand, RNAz p=0.506232

	1-525, gnl\|bosTau2\|chr10 (13771834-13772357)
	1-525, gnl\|Hg17\|chr14 (22896111-22895576)
	1-525, gnl\|Mm7\|chr14 (49783676-49783227)