Non-Coding RNA Search

Pig2-109F13

Sequence:


               
               CTGGTATAAACTCTTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAATTCTGTTTTACCAT
TTTCTTTTGAAACACTCAACTTGGGAAATGAAAATACAGATTCTAGTGCTAACATGCTTG
GGAAAACACAGTCTAGATTGCTAATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAAC
ACTGTTCCAATCTTTCAACAAGAACTTGTAGTCCCTGGTCCCATTCGGAAGAGACCCGTT
CAGACAATGAGACCTTAAACATTCAGTTTGAAGAATCCACGCAGTTTAATGCAGAAGATA
TTAATTACGTAGTTCCTAGAGTCTCGTCAAATTATGTAGATGAAGAACTTCTAGACTTTT
TGCAAGACGAGACTTGTCAGCAAAACAGTAGAACTTTAGGAGAAATCCCGACCTTAGTTT
TCCAAAAAAAATCTAAACTAGAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTATAAACTCTTGTTTTTCAGTGTTTGAAGTGCAATGCAGTAATTCTGTTTTACCAT
TTTCTTTTGAAACACTCAACTTGGGAAATGAAAATACAGATTCTAGTGCTAACATGCTTG
GGAAAACACAGTCTAGATTGCTAATATGGACCAAAAATAGTGCCTTTGAAGAAAACGAAC
ACTGTTCCAATCTTTCAACAAGAACTTGTAGTCCCTGGTCCCATTCGGAAGAGACCCGTT
CAGACAATGAGACCTTAAACATTCAGTTTGAAGAATCCACGCAGTTTAATGCAGAAGATA
TTAATTACGTAGTTCCTAGAGTCTCGTCAAATTATGTAGATGAAGAACTTCTAGACTTTT
TGCAAGACGAGACTTGTCAGCAAAACAGTAGAACTTTAGGAGAAATCCCGACCTTAGTTT
TCCAAAAAAAATCTAAACTAGAATCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.697711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.697711

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-446, gnl|bosTau2|chr6 (68936797-68937242)
               

               
               1-446, gnl|canFam2|chr3 (61781437-61781832)
               

               
               1-446, gnl|danRer3|chr7 (34469171-34468764)
               

               
               1-446, gnl|echTel1|scaffold_254016 (6-406)
               

               
               1-446, gnl|fr1|chrUn (192570079-192569663)
               

               
               1-446, gnl|galGal2|chr4 (80154028-80154429)
               

               
               1-446, gnl|hg17|chr4 (6982067-6982462)
               

               
               1-446, gnl|Hg17|chr4 (6982106-6982551)
               

               
               1-446, gnl|loxAfr1|scaffold_122796 (5255-5650)
               

               
               1-446, gnl|mm7|chr5 (35678457-35678062)
               

               
               1-446, gnl|Mm7|chr5 (35678416-35677971)
               

               
               1-446, gnl|monDom2|scaffold_10 (34812002-34812403)
               

               
               1-446, gnl|oryCun1|scaffold_201309 (12622-12224)
               

               
               1-446, gnl|panTro1|chr3 (7048000-7048394)
               

               
               1-446, gnl|rheMac2|chr5 (1941480-1941085)
               

               
               1-446, gnl|rn3|chr14 (79727853-79728248)
               

               
               1-446, gnl|tetNig1|chrUn_random (83417134-83417526)
               

               
               1-446, gnl|xenTro1|scaffold_119 (2078916-2078529)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-446, gnl|bosTau2|chr6 (68936797-68937242)
               

               
               1-446, gnl|canFam2|chr3 (61781437-61781832)
               

               
               1-446, gnl|danRer3|chr7 (34469171-34468764)
               

               
               1-446, gnl|echTel1|scaffold_254016 (6-406)
               

               
               1-446, gnl|fr1|chrUn (192570079-192569663)
               

               
               1-446, gnl|galGal2|chr4 (80154028-80154429)
               

               
               1-446, gnl|hg17|chr4 (6982067-6982462)
               

               
               1-446, gnl|Hg17|chr4 (6982106-6982551)
               

               
               1-446, gnl|loxAfr1|scaffold_122796 (5255-5650)
               

               
               1-446, gnl|mm7|chr5 (35678457-35678062)
               

               
               1-446, gnl|Mm7|chr5 (35678416-35677971)
               

               
               1-446, gnl|monDom2|scaffold_10 (34812002-34812403)
               

               
               1-446, gnl|oryCun1|scaffold_201309 (12622-12224)
               

               
               1-446, gnl|panTro1|chr3 (7048000-7048394)
               

               
               1-446, gnl|rheMac2|chr5 (1941480-1941085)
               

               
               1-446, gnl|rn3|chr14 (79727853-79728248)
               

               
               1-446, gnl|tetNig1|chrUn_random (83417134-83417526)
               

               
               1-446, gnl|xenTro1|scaffold_119 (2078916-2078529)

	1-446, gnl\|bosTau2\|chr6 (68936797-68937242)
	1-446, gnl\|canFam2\|chr3 (61781437-61781832)
	1-446, gnl\|danRer3\|chr7 (34469171-34468764)
	1-446, gnl\|echTel1\|scaffold_254016 (6-406)
	1-446, gnl\|fr1\|chrUn (192570079-192569663)
	1-446, gnl\|galGal2\|chr4 (80154028-80154429)
	1-446, gnl\|hg17\|chr4 (6982067-6982462)
	1-446, gnl\|Hg17\|chr4 (6982106-6982551)
	1-446, gnl\|loxAfr1\|scaffold_122796 (5255-5650)
	1-446, gnl\|mm7\|chr5 (35678457-35678062)
	1-446, gnl\|Mm7\|chr5 (35678416-35677971)
	1-446, gnl\|monDom2\|scaffold_10 (34812002-34812403)
	1-446, gnl\|oryCun1\|scaffold_201309 (12622-12224)
	1-446, gnl\|panTro1\|chr3 (7048000-7048394)
	1-446, gnl\|rheMac2\|chr5 (1941480-1941085)
	1-446, gnl\|rn3\|chr14 (79727853-79728248)
	1-446, gnl\|tetNig1\|chrUn_random (83417134-83417526)
	1-446, gnl\|xenTro1\|scaffold_119 (2078916-2078529)