Non-Coding RNA Search

Pig2-109K03

Sequence:


               
               ACTTTGAGCTCATTAGAACTTCTGGACCCAGGAGTGCCTTTGTGTCTGTGGAGGAGCTCG
GGGTGGGGTGTGCGTGTCCTTGAGCTGTCAGGAGGCTCTGTCACAGAGCTCTCTGCATCT
TTAGAGGCTACTACTCACTTGAAGTGGGTACCCAGCCAGCTTTTTTCATGACAGATTTTG
ATTGTGATACATTTGGCTATTCATTTGACACCTAAAAGAAAATGACTCACCTCTTTGGAA
AGATGTAAGGTGTTTCATTATCTGATCATTTCTGCAAACCCTTACCGCCTCCGTCCGTTG
GTCTGTCTCGTTACTGTGCACCCTCACCAGCTGGCCCCCTGCGTGCTTCTCTCTGAGGCA
GCAAGGCCTTATCGGGCTCTCGAATCGGGTTATTATCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTGAGCTCATTAGAACTTCTGGACCCAGGAGTGCCTTTGTGTCTGTGGAGGAGCTCG
GGGTGGGGTGTGCGTGTCCTTGAGCTGTCAGGAGGCTCTGTCACAGAGCTCTCTGCATCT
TTAGAGGCTACTACTCACTTGAAGTGGGTACCCAGCCAGCTTTTTTCATGACAGATTTTG
ATTGTGATACATTTGGCTATTCATTTGACACCTAAAAGAAAATGACTCACCTCTTTGGAA
AGATGTAAGGTGTTTCATTATCTGATCATTTCTGCAAACCCTTACCGCCTCCGTCCGTTG
GTCTGTCTCGTTACTGTGCACCCTCACCAGCTGGCCCCCTGCGTGCTTCTCTCTGAGGCA
GCAAGGCCTTATCGGGCTCTCGAATCGGGTTATTATCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               179-398, - strand, RNAz p=0.731493

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-398, - strand, RNAz p=0.731493

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-398, gnl|bosTau2|chr13 (39262467-39262068)
               

               
               1-398, gnl|canFam2|chr24 (46189824-46190093)
               

               
               1-398, gnl|dasNov1|scaffold_34943 (6155-6424)
               

               
               1-398, gnl|hg17|chr20 (56427523-56427773)
               

               
               1-398, gnl|Hg17|chr20 (56427526-56427897)
               

               
               1-398, gnl|loxAfr1|scaffold_55321 (4745-5009)
               

               
               1-398, gnl|mm7|chr2 (173507273-173507516)
               

               
               1-398, gnl|Mm7|chr2 (173507276-173507638)
               

               
               1-398, gnl|oryCun1|scaffold_170545 (10009-10257)
               

               
               1-398, gnl|panTro1|chr21 (59414840-59415090)
               

               
               1-398, gnl|rheMac2|chr10 (6100756-6100506)
               

               
               1-398, gnl|rn3|chr3 (164560999-164561242)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-398, gnl|bosTau2|chr13 (39262467-39262068)
               

               
               1-398, gnl|canFam2|chr24 (46189824-46190093)
               

               
               1-398, gnl|dasNov1|scaffold_34943 (6155-6424)
               

               
               1-398, gnl|hg17|chr20 (56427523-56427773)
               

               
               1-398, gnl|Hg17|chr20 (56427526-56427897)
               

               
               1-398, gnl|loxAfr1|scaffold_55321 (4745-5009)
               

               
               1-398, gnl|mm7|chr2 (173507273-173507516)
               

               
               1-398, gnl|Mm7|chr2 (173507276-173507638)
               

               
               1-398, gnl|oryCun1|scaffold_170545 (10009-10257)
               

               
               1-398, gnl|panTro1|chr21 (59414840-59415090)
               

               
               1-398, gnl|rheMac2|chr10 (6100756-6100506)
               

               
               1-398, gnl|rn3|chr3 (164560999-164561242)

	1-398, gnl\|bosTau2\|chr13 (39262467-39262068)
	1-398, gnl\|canFam2\|chr24 (46189824-46190093)
	1-398, gnl\|dasNov1\|scaffold_34943 (6155-6424)
	1-398, gnl\|hg17\|chr20 (56427523-56427773)
	1-398, gnl\|Hg17\|chr20 (56427526-56427897)
	1-398, gnl\|loxAfr1\|scaffold_55321 (4745-5009)
	1-398, gnl\|mm7\|chr2 (173507273-173507516)
	1-398, gnl\|Mm7\|chr2 (173507276-173507638)
	1-398, gnl\|oryCun1\|scaffold_170545 (10009-10257)
	1-398, gnl\|panTro1\|chr21 (59414840-59415090)
	1-398, gnl\|rheMac2\|chr10 (6100756-6100506)
	1-398, gnl\|rn3\|chr3 (164560999-164561242)