Pig2-109P01
|
AGCTCGCCCTCTTCCCTCAGCTAACAATGAAGAGGAGAAATGATCCAGAATGCACTGCCC
CTATCAAGAAACAGAAGAAAAGAGTTGCAGAGCTTGCTCTGAGCCTCAGCTCTACGTCTG
ATGATGAACCTCCCTCCTCAGTCAATCATGCGGCAAAAGCATGCGCTACAAGCCTAAGGG
GGTCTGACAGCGAGACCGAAGGGAAGCAGCGCAGCTCTGGTTCTTTTGATGATGCGTTCA
AAGCAGACTCTCTTGTGGAGGGAACTTCTTCTCGCTATTCCATGTATAATAGTGTTTCCC
AGAAGCTTATGGCCAAGATGGGCTTCAAGGAAGGTGAAGGATTGGGTAAATACAGCCAGG
GTCGGAAGGACATTGTTGAAGCTTCTAATCAGAAAGGTCGACGAGGCTTGGGTCTTACAC
TGCAAGGCTTTGACCAGGAGCTGAATGTGGACTGGCGAGCTGAGCCAGAGCCCAGCGCCT
GTGAGCAGGTATCATGGTTCCCGGGATGTACCACTGAAATTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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AGCTCGCCCTCTTCCCTCAGCTAACAATGAAGAGGAGAAATGATCCAGAATGCACTGCCC
CTATCAAGAAACAGAAGAAAAGAGTTGCAGAGCTTGCTCTGAGCCTCAGCTCTACGTCTG
ATGATGAACCTCCCTCCTCAGTCAATCATGCGGCAAAAGCATGCGCTACAAGCCTAAGGG
GGTCTGACAGCGAGACCGAAGGGAAGCAGCGCAGCTCTGGTTCTTTTGATGATGCGTTCA
AAGCAGACTCTCTTGTGGAGGGAACTTCTTCTCGCTATTCCATGTATAATAGTGTTTCCC
AGAAGCTTATGGCCAAGATGGGCTTCAAGGAAGGTGAAGGATTGGGTAAATACAGCCAGG
GTCGGAAGGACATTGTTGAAGCTTCTAATCAGAAAGGTCGACGAGGCTTGGGTCTTACAC
TGCAAGGCTTTGACCAGGAGCTGAATGTGGACTGGCGAGCTGAGCCAGAGCCCAGCGCCT
GTGAGCAGGTATCATGGTTCCCGGGATGTACCACTGAAATTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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22-159, gnl|bosTau2|chr23 (10384764-10384901) |
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22-159, gnl|canFam2|chr12 (9457262-9457371) |
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22-159, gnl|dasNov1|scaffold_37463 (7375-7266) |
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22-159, gnl|echTel1|scaffold_322334 (108821-108930) |
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22-159, gnl|galGal2|chr3 (26504665-26504556) |
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22-159, gnl|hg17|chr6 (37511381-37511490) |
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22-159, gnl|Hg17|chr6 (37511378-37511516) |
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22-159, gnl|loxAfr1|scaffold_189949 (191-85) |
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22-159, gnl|mm7|chr17 (27855474-27855580) |
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22-159, gnl|Mm7|chr17 (27855472-27855606) |
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22-159, gnl|monDom2|scaffold_42 (8736227-8736118) |
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22-159, gnl|oryCun1|scaffold_105353 (4484-4375) |
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22-159, gnl|panTro1|chr5 (37999546-37999655) |
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22-159, gnl|rheMac2|chr4 (37212669-37212778) |
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22-159, gnl|rn3|chr20 (7972676-7972782) |
| |
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311-470, gnl|bosTau2|chr23 (10397111-10397270) |
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311-470, gnl|Hg17|chr6 (37522044-37522203) |
|
311-470, gnl|Mm7|chr17 (27868309-27868468) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
22-159, gnl|bosTau2|chr23 (10384764-10384901) |
|
22-159, gnl|canFam2|chr12 (9457262-9457371) |
|
22-159, gnl|dasNov1|scaffold_37463 (7375-7266) |
|
22-159, gnl|echTel1|scaffold_322334 (108821-108930) |
|
22-159, gnl|galGal2|chr3 (26504665-26504556) |
|
22-159, gnl|hg17|chr6 (37511381-37511490) |
|
22-159, gnl|Hg17|chr6 (37511378-37511516) |
|
22-159, gnl|loxAfr1|scaffold_189949 (191-85) |
|
22-159, gnl|mm7|chr17 (27855474-27855580) |
|
22-159, gnl|Mm7|chr17 (27855472-27855606) |
|
22-159, gnl|monDom2|scaffold_42 (8736227-8736118) |
|
22-159, gnl|oryCun1|scaffold_105353 (4484-4375) |
|
22-159, gnl|panTro1|chr5 (37999546-37999655) |
|
22-159, gnl|rheMac2|chr4 (37212669-37212778) |
|
22-159, gnl|rn3|chr20 (7972676-7972782) |
| |
|
311-470, gnl|bosTau2|chr23 (10397111-10397270) |
|
311-470, gnl|Hg17|chr6 (37522044-37522203) |
|
311-470, gnl|Mm7|chr17 (27868309-27868468) |
