Non-Coding RNA Search

Pig2-110E06

Sequence:


               
               GATGCTCTAGGGACCTGGCTGGGCCGGAATCAAAATGCCACCCTTGGCTGCCGCTAGTCC
CATCTGACAATGATAATGTGACCAGCACTGCTGGAAAGGTCTAAACAGGACAACTGGGAT
GGCTATAGCAGAGGGTTCAGAACCCAACTGCCTGGATGGGAGAACTGGTTAGAGGTTTTC
TTAAGTCCCAGAGAGGACAGAGAGTTAAAAAACAGTTAGACAGGAATCATTGAGCCCCGC
CAAATTTCCAAGGTTTAAACTGTGCATTGCATTCCTGGCCAAATTGCCTTTGTCCGTGTG
TCCTAACAGAGGGATGACCAAGCTCATCTAGAGAAATTTCTCAAAGACCAGGAAGGATGT
TGCCCATTTCCCAGACGTTTCCAGTTGGATCAAGGAGCTATTTCATTCAGCTTCGGAAAG
GAGTCAGAGCCAAGACCTGTCTACCTTCTGGAGCTGCTATGTTTTCTTTTGGCTCTGGAG
GGATCAAATGGTTTTGGCACATCAGGAGGTTTGAATCAAGCTGGGAAACCAAGACCACAA
TGGGTGGAAAACATGGCGGTCTCCACACGGCTTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCTCTAGGGACCTGGCTGGGCCGGAATCAAAATGCCACCCTTGGCTGCCGCTAGTCC
CATCTGACAATGATAATGTGACCAGCACTGCTGGAAAGGTCTAAACAGGACAACTGGGAT
GGCTATAGCAGAGGGTTCAGAACCCAACTGCCTGGATGGGAGAACTGGTTAGAGGTTTTC
TTAAGTCCCAGAGAGGACAGAGAGTTAAAAAACAGTTAGACAGGAATCATTGAGCCCCGC
CAAATTTCCAAGGTTTAAACTGTGCATTGCATTCCTGGCCAAATTGCCTTTGTCCGTGTG
TCCTAACAGAGGGATGACCAAGCTCATCTAGAGAAATTTCTCAAAGACCAGGAAGGATGT
TGCCCATTTCCCAGACGTTTCCAGTTGGATCAAGGAGCTATTTCATTCAGCTTCGGAAAG
GAGTCAGAGCCAAGACCTGTCTACCTTCTGGAGCTGCTATGTTTTCTTTTGGCTCTGGAG
GGATCAAATGGTTTTGGCACATCAGGAGGTTTGAATCAAGCTGGGAAACCAAGACCACAA
TGGGTGGAAAACATGGCGGTCTCCACACGGCTTGAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               105-212, - strand, RNAz p=0.9996
               

               
               399-506, + strand, RNAz p=0.920888

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-212, - strand, RNAz p=0.9996
               

               
               399-506, + strand, RNAz p=0.920888

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               448-567, + strand, RNAmicro p=0.999999
               

               
               106-231, - strand, RNAmicro p=0.946273

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               448-567, + strand, RNAmicro p=0.999999
               

               
               106-231, - strand, RNAmicro p=0.946273

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-573, gnl|bosTau2|chr13 (56264507-56263909)
               

               
               1-573, gnl|Hg17|chr20 (42553662-42554241)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr13 (56264507-56263909)
               

               
               1-573, gnl|Hg17|chr20 (42553662-42554241)

	105-212, - strand, RNAz p=0.9996
	399-506, + strand, RNAz p=0.920888

	448-567, + strand, RNAmicro p=0.999999
	106-231, - strand, RNAmicro p=0.946273

	1-573, gnl\|bosTau2\|chr13 (56264507-56263909)
	1-573, gnl\|Hg17\|chr20 (42553662-42554241)