Non-Coding RNA Search

Pig2-110M03

Sequence:


               
               TCGTCGACCCCGCGTCCGCGCTTGAGTGCTAAACTGCTGTGGAAACCAAGTGGGGACTTC
ACTGACAGTGACAGTGACAACTTTGAGGAGGCTGAGGGCCGCTCAGCCAGCAGTCACGCT
GCCCTGACTTTTTCCTCTTCCTCTGCCGCCTGCTCAGCCCGCTGCTCAAGGCCTTTGCGC
AGGCTGCCACCTTCCTCCGCCAGGGACAGCTGCCGGACACTGAGTCTGGCTACGTGGAGC
AGCTGTTCCAGTTCTTACAGGCCACTGCCCAGGAGGAAGGGTTCTTTGAGTGTGCAGACC
CTAATCTCGCCATCAGTGCTGTCTGGACCTTCAGAGACTTGGGGGTGCTGCAACAGATGC
CCAGCCCTGCCGGCCCCATGCTCCACCTGTCCCCTACCTTTGCCAGCTGGGACAACCAGG
AAAAGCTGGAACAGTTCATCCAGCAGTTCATCTGTGGCTAGAACTATAGGGAGGAGCCCC
TTGCTGAGCCTTCTCAGTCCCAGAACACGGCCATGCCCTGGAGCCTGAAGACTAGGAGCT
GCAAACCCTCAGCTGGACTATAAGATCCTTAAGGTCTGACTGGCCCTTGCTGTTGCTTGC
TTTCTCTGTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTCGACCCCGCGTCCGCGCTTGAGTGCTAAACTGCTGTGGAAACCAAGTGGGGACTTC
ACTGACAGTGACAGTGACAACTTTGAGGAGGCTGAGGGCCGCTCAGCCAGCAGTCACGCT
GCCCTGACTTTTTCCTCTTCCTCTGCCGCCTGCTCAGCCCGCTGCTCAAGGCCTTTGCGC
AGGCTGCCACCTTCCTCCGCCAGGGACAGCTGCCGGACACTGAGTCTGGCTACGTGGAGC
AGCTGTTCCAGTTCTTACAGGCCACTGCCCAGGAGGAAGGGTTCTTTGAGTGTGCAGACC
CTAATCTCGCCATCAGTGCTGTCTGGACCTTCAGAGACTTGGGGGTGCTGCAACAGATGC
CCAGCCCTGCCGGCCCCATGCTCCACCTGTCCCCTACCTTTGCCAGCTGGGACAACCAGG
AAAAGCTGGAACAGTTCATCCAGCAGTTCATCTGTGGCTAGAACTATAGGGAGGAGCCCC
TTGCTGAGCCTTCTCAGTCCCAGAACACGGCCATGCCCTGGAGCCTGAAGACTAGGAGCT
GCAAACCCTCAGCTGGACTATAAGATCCTTAAGGTCTGACTGGCCCTTGCTGTTGCTTGC
TTTCTCTGTCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61837837|ref|XP_614608.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61837837|ref|XP_614608.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               442-541, - strand, RNAz p=0.512494

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-541, - strand, RNAz p=0.512494

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               101-220, gnl|bosTau2|chr11 (138708-138589)
               

               
               101-220, gnl|Hg17|chr2 (96110849-96110730)
               

               
               101-220, gnl|Mm7|chr2 (127175859-127175978)
               


               
               344-541, gnl|bosTau2|chr11 (137812-137616)
               

               
               344-541, gnl|Hg17|chr2 (95501190-95500976)
               

               
               344-541, gnl|Mm7|chr2 (127176697-127176888)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-220, gnl|bosTau2|chr11 (138708-138589)
               

               
               101-220, gnl|Hg17|chr2 (96110849-96110730)
               

               
               101-220, gnl|Mm7|chr2 (127175859-127175978)
               


               
               344-541, gnl|bosTau2|chr11 (137812-137616)
               

               
               344-541, gnl|Hg17|chr2 (95501190-95500976)
               

               
               344-541, gnl|Mm7|chr2 (127176697-127176888)

	101-220, gnl\|bosTau2\|chr11 (138708-138589)
	101-220, gnl\|Hg17\|chr2 (96110849-96110730)
	101-220, gnl\|Mm7\|chr2 (127175859-127175978)

	344-541, gnl\|bosTau2\|chr11 (137812-137616)
	344-541, gnl\|Hg17\|chr2 (95501190-95500976)
	344-541, gnl\|Mm7\|chr2 (127176697-127176888)