Non-Coding RNA Search

Pig2-110P09

Sequence:


               
               ACAACCTCTGCCTTTTCGTGCCTGGGGTGAATCTGGAGAAGATGTCCAGTCTCCCGAAGC
CCGACGGACACGGAATCAGGGTGGCCCCGCCCTCTGCTTTCCTCAACCAGCCAGGCAGCC
TCGCCAAGGACTCCCCTGGAAAAAACCCCATGGCACCCCCTTCTAAAGAACCTGCTGGCA
GAGAAGGCATTGAGATAACCCCCAGCGAGGGCCTGAGTCACCGGGCTGAAGGCACCCCCC
CTGAAAAGGAGCCTGGTGGGACCATGCTGCCCCCTAAAACCCACCGGAAGATGGCTCGGA
AGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACCTCTGCCTTTTCGTGCCTGGGGTGAATCTGGAGAAGATGTCCAGTCTCCCGAAGC
CCGACGGACACGGAATCAGGGTGGCCCCGCCCTCTGCTTTCCTCAACCAGCCAGGCAGCC
TCGCCAAGGACTCCCCTGGAAAAAACCCCATGGCACCCCCTTCTAAAGAACCTGCTGGCA
GAGAAGGCATTGAGATAACCCCCAGCGAGGGCCTGAGTCACCGGGCTGAAGGCACCCCCC
CTGAAAAGGAGCCTGGTGGGACCATGCTGCCCCCTAAAACCCACCGGAAGATGGCTCGGA
AGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-298, - strand, RNAz p=0.759691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-298, - strand, RNAz p=0.759691

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               75-212, - strand, RNAmicro p=0.999977
               

               
               85-211, + strand, RNAmicro p=0.995166

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               75-212, - strand, RNAmicro p=0.999977
               

               
               85-211, + strand, RNAmicro p=0.995166

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-298, gnl|bosTau2|chr3 (25974352-25974064)
               

               
               10-298, gnl|Hg17|chr1 (109742181-109742469)
               

               
               10-298, gnl|Mm7|chr3 (108025398-108025110)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-298, gnl|bosTau2|chr3 (25974352-25974064)
               

               
               10-298, gnl|Hg17|chr1 (109742181-109742469)
               

               
               10-298, gnl|Mm7|chr3 (108025398-108025110)

	75-212, - strand, RNAmicro p=0.999977
	85-211, + strand, RNAmicro p=0.995166

	10-298, gnl\|bosTau2\|chr3 (25974352-25974064)
	10-298, gnl\|Hg17\|chr1 (109742181-109742469)
	10-298, gnl\|Mm7\|chr3 (108025398-108025110)