Non-Coding RNA Search

Pig2-113G19

Sequence:


               
               TCTAGATGCAGCCTGGTCAACAGGTGCAGGGCGCCAGCAAGAGAACTCAGTGCTCAGGAG
GCGTCGCTTGGTCCACTGCTAATGGTTAAGTTCTGAAGCCGGGGTAGCTCACCTCTGGCC
ATCAGGAAGAGCCCAAACCTGGGAGAAGTGAAGCCGCCCCCCTTCCTCTGAGCTGCCGGG
TCTGAATGCTCAATGGTAGGGCTTGACCTTCTCAGGAAGGATATTTTCTCATTCCTGACT
AAGCTGCTTCTCTTCCTTCTCCCTGCCTAAGCCAGGCCTGAGGCTCCCTGGAAGCCCAGC
ACAGTCAGCTCCTGTGCCCCCCCCCCCCAATACCTACATACTCTGGAGAGTGAACCATTA
TCTCAAAGGGCAGATAATCCAAAAGTCGGGCTGCAGGGACTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGATGCAGCCTGGTCAACAGGTGCAGGGCGCCAGCAAGAGAACTCAGTGCTCAGGAG
GCGTCGCTTGGTCCACTGCTAATGGTTAAGTTCTGAAGCCGGGGTAGCTCACCTCTGGCC
ATCAGGAAGAGCCCAAACCTGGGAGAAGTGAAGCCGCCCCCCTTCCTCTGAGCTGCCGGG
TCTGAATGCTCAATGGTAGGGCTTGACCTTCTCAGGAAGGATATTTTCTCATTCCTGACT
AAGCTGCTTCTCTTCCTTCTCCCTGCCTAAGCCAGGCCTGAGGCTCCCTGGAAGCCCAGC
ACAGTCAGCTCCTGTGCCCCCCCCCCCCAATACCTACATACTCTGGAGAGTGAACCATTA
TCTCAAAGGGCAGATAATCCAAAAGTCGGGCTGCAGGGACTCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               173-327, - strand, RNAz p=0.994178
               

               
               229-397, - strand, RNAz p=0.958623

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-327, - strand, RNAz p=0.994178
               

               
               229-397, - strand, RNAz p=0.958623

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               99-397, gnl|bosTau2|chr19 (6233399-6233108)
               

               
               99-397, gnl|canFam2|chr9 (38561529-38560267)
               

               
               99-397, gnl|echTel1|scaffold_293972 (51702-52826)
               

               
               99-397, gnl|hg17|chr17 (56838784-56840084)
               

               
               99-397, gnl|Hg17|chr17 (56839255-56839544)
               

               
               99-397, gnl|loxAfr1|scaffold_1795 (48212-46986)
               

               
               99-397, gnl|mm7|chr11 (85909171-85910365)
               

               
               99-397, gnl|Mm7|chr11 (85909551-85909826)
               

               
               99-397, gnl|oryCun1|scaffold_193833 (117883-116622)
               

               
               99-397, gnl|panTro1|chr19 (48297142-48295848)
               

               
               99-397, gnl|rheMac2|chr16 (45083430-45082145)
               

               
               99-397, gnl|rn3|chr10 (74105514-74106669)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-397, gnl|bosTau2|chr19 (6233399-6233108)
               

               
               99-397, gnl|canFam2|chr9 (38561529-38560267)
               

               
               99-397, gnl|echTel1|scaffold_293972 (51702-52826)
               

               
               99-397, gnl|hg17|chr17 (56838784-56840084)
               

               
               99-397, gnl|Hg17|chr17 (56839255-56839544)
               

               
               99-397, gnl|loxAfr1|scaffold_1795 (48212-46986)
               

               
               99-397, gnl|mm7|chr11 (85909171-85910365)
               

               
               99-397, gnl|Mm7|chr11 (85909551-85909826)
               

               
               99-397, gnl|oryCun1|scaffold_193833 (117883-116622)
               

               
               99-397, gnl|panTro1|chr19 (48297142-48295848)
               

               
               99-397, gnl|rheMac2|chr16 (45083430-45082145)
               

               
               99-397, gnl|rn3|chr10 (74105514-74106669)

	173-327, - strand, RNAz p=0.994178
	229-397, - strand, RNAz p=0.958623

	99-397, gnl\|bosTau2\|chr19 (6233399-6233108)
	99-397, gnl\|canFam2\|chr9 (38561529-38560267)
	99-397, gnl\|echTel1\|scaffold_293972 (51702-52826)
	99-397, gnl\|hg17\|chr17 (56838784-56840084)
	99-397, gnl\|Hg17\|chr17 (56839255-56839544)
	99-397, gnl\|loxAfr1\|scaffold_1795 (48212-46986)
	99-397, gnl\|mm7\|chr11 (85909171-85910365)
	99-397, gnl\|Mm7\|chr11 (85909551-85909826)
	99-397, gnl\|oryCun1\|scaffold_193833 (117883-116622)
	99-397, gnl\|panTro1\|chr19 (48297142-48295848)
	99-397, gnl\|rheMac2\|chr16 (45083430-45082145)
	99-397, gnl\|rn3\|chr10 (74105514-74106669)