Non-Coding RNA Search

Pig2-113O03

Sequence:


               
               GCCCAGTGTTTCTAAAAGGAGGCTGGATTGGCATGCGTGTGGAATAATTCTTCATAGGAT
TGTTCCACACATGGCAGGAGATTTAGCACATCCAGCCTCCACACGTTGAATACTAATAGC
TCCTGCAGATTCCTCAATGTCCCCTGGGTACCACCCACAGTTAAGAACCATTGGGAATCC
AGCCCCATTCAAGCAGAGCTACTGTGGTCTCTCAAAGGGTGTCAAATAGACCACCCACAC
TAAATCTGCTGAACCAGAGCCTCTAGGATTGTGGCCCAAGAATTAACCTGCAGGTGATCA
CTACTGCAATGAAAGTTTGAAACCAAAGCCACTTAATAATCAAATGCTTCTCTAAGTCTG
AAGCTTTTAACAACTTCTCTGACACAGCAATCCTTGACATCTTTTGAGAGATTAAAATTG
TAAAGGTGGGGAGAGGTTAAAAATTTTAAAAATCATTCTTTCCATCTCAAATACCCAGTT
AAGTGAGTAGAAAAGGGTTTGAATTTCCTCTGAGTTCTTTCTACTGCTATTTATCAGTTA
TGAGTTTATTTACCTGCTATCACCAGAAAACCAGACTAATAGTTACACAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGTGTTTCTAAAAGGAGGCTGGATTGGCATGCGTGTGGAATAATTCTTCATAGGAT
TGTTCCACACATGGCAGGAGATTTAGCACATCCAGCCTCCACACGTTGAATACTAATAGC
TCCTGCAGATTCCTCAATGTCCCCTGGGTACCACCCACAGTTAAGAACCATTGGGAATCC
AGCCCCATTCAAGCAGAGCTACTGTGGTCTCTCAAAGGGTGTCAAATAGACCACCCACAC
TAAATCTGCTGAACCAGAGCCTCTAGGATTGTGGCCCAAGAATTAACCTGCAGGTGATCA
CTACTGCAATGAAAGTTTGAAACCAAAGCCACTTAATAATCAAATGCTTCTCTAAGTCTG
AAGCTTTTAACAACTTCTCTGACACAGCAATCCTTGACATCTTTTGAGAGATTAAAATTG
TAAAGGTGGGGAGAGGTTAAAAATTTTAAAAATCATTCTTTCCATCTCAAATACCCAGTT
AAGTGAGTAGAAAAGGGTTTGAATTTCCTCTGAGTTCTTTCTACTGCTATTTATCAGTTA
TGAGTTTATTTACCTGCTATCACCAGAAAACCAGACTAATAGTTACACAAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-114, + strand, RNAz p=0.825667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, + strand, RNAz p=0.825667

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-592, gnl|bosTau2|chr9 (4801981-4802573)
               

               
               1-592, gnl|Hg17|chr9 (70396794-70394957)
               

               
               1-592, gnl|Mm7|chr19 (22677391-22679734)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-592, gnl|bosTau2|chr9 (4801981-4802573)
               

               
               1-592, gnl|Hg17|chr9 (70396794-70394957)
               

               
               1-592, gnl|Mm7|chr19 (22677391-22679734)

	1-592, gnl\|bosTau2\|chr9 (4801981-4802573)
	1-592, gnl\|Hg17\|chr9 (70396794-70394957)
	1-592, gnl\|Mm7\|chr19 (22677391-22679734)