Non-Coding RNA Search

Pig2-114L19

Sequence:


               
               GTCTTGACTGAGTAAAGATTGGGGAGAGTTTATCTGAGTCTTTGTTTTCAGAACAGTTTC
TCTGGAACTGTAGAGAAAACTTGCGCTGTGTTTGAGGAGATGCAGAAGGTATTTTGCAGG
GAACAAATCCCTGAGGTCTATGCTTAGAGACATCTGTTACGGTGCCAGCTGGTACAGATG
GGACAGAGGAAGTAGGAGTTGACAAGGCTGGGAACATTAACTGGGAATGATGAGATAAAG
GAGAGGAGTTCAAACACTGACTGTGGGGTCTGCCTTTTGTTTGAACCATTGGCTTTGGTT
GCTCCATTGTTGCTGAACTAGGAAGTCCTACTGAAATGCTGGCCAGTCGGTCAGAAATGT
CCTCTGAACTGGCACTCAATTTTGTAGCACACAATCCTTTTCCAGTTTTCTCTAAATGGT
CTGTGCGCTCAAGGGAACTGTTCTCTGTGGCTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTGACTGAGTAAAGATTGGGGAGAGTTTATCTGAGTCTTTGTTTTCAGAACAGTTTC
TCTGGAACTGTAGAGAAAACTTGCGCTGTGTTTGAGGAGATGCAGAAGGTATTTTGCAGG
GAACAAATCCCTGAGGTCTATGCTTAGAGACATCTGTTACGGTGCCAGCTGGTACAGATG
GGACAGAGGAAGTAGGAGTTGACAAGGCTGGGAACATTAACTGGGAATGATGAGATAAAG
GAGAGGAGTTCAAACACTGACTGTGGGGTCTGCCTTTTGTTTGAACCATTGGCTTTGGTT
GCTCCATTGTTGCTGAACTAGGAAGTCCTACTGAAATGCTGGCCAGTCGGTCAGAAATGT
CCTCTGAACTGGCACTCAATTTTGTAGCACACAATCCTTTTCCAGTTTTCTCTAAATGGT
CTGTGCGCTCAAGGGAACTGTTCTCTGTGGCTTCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-199, - strand, RNAz p=0.954495
               

               
               338-456, - strand, RNAz p=0.604736

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.954495
               

               
               338-456, - strand, RNAz p=0.604736

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               335-413, + strand, RNAmicro p=0.937757

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               335-413, + strand, RNAmicro p=0.937757

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-456, gnl|bosTau2|chr20 (12709793-12710248)
               

               
               1-456, gnl|Hg17|chr5 (56213935-56213465)
               

               
               1-456, gnl|Mm7|chr13 (108912145-108912573)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr20 (12709793-12710248)
               

               
               1-456, gnl|Hg17|chr5 (56213935-56213465)
               

               
               1-456, gnl|Mm7|chr13 (108912145-108912573)

	1-199, - strand, RNAz p=0.954495
	338-456, - strand, RNAz p=0.604736

	1-456, gnl\|bosTau2\|chr20 (12709793-12710248)
	1-456, gnl\|Hg17\|chr5 (56213935-56213465)
	1-456, gnl\|Mm7\|chr13 (108912145-108912573)