Non-Coding RNA Search

Pig2-114P18

Sequence:


               
               AAATGTGCATCTCAAAAACAGACAATGCTTTTGTTTCTATTTCATTTTTTTCAAAGACTC
AGCACCACCTAGTAATTTGCAGTGGTGTGATATTCCTGCGGAATTCTTGAGTTCAGAGTC
TGCTGTGTCATTAGGACAAATAGCTTGGTATTTTACAGCTTGGGGGACCGCACATTTCAA
AACTGCCTCTTTTGCAACTGGGACACAGCAGAGTCAATTCATTTAATCCTCTCCAACAAT
CTGGAGAGGTAGATTTGAAATAACATCGCATGGGGTTGAGTTTTTTTGAGTGTGAGAGAA
CGCCAAGTATGCAGCTTAACCATTACCCTCAGAAGTTCGCAATGAAATGTTTTCCTCCAC
CTGTTTTTGCAAAGGGGGGCCTTCAGGTTCACATCCAGGTTCACTTAATGAATGCTTGTG
GATACCACCTCCTACCATGCAGGTGTTCTTCTGGGCCCTCACTCCAAAGTTTAGAGTTGC
GTGGAGGTGCTTATCAATCCTGCCCCTTCTTACAATGTCACAGGTCATAGGATGAGCCAG
GAATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTGCATCTCAAAAACAGACAATGCTTTTGTTTCTATTTCATTTTTTTCAAAGACTC
AGCACCACCTAGTAATTTGCAGTGGTGTGATATTCCTGCGGAATTCTTGAGTTCAGAGTC
TGCTGTGTCATTAGGACAAATAGCTTGGTATTTTACAGCTTGGGGGACCGCACATTTCAA
AACTGCCTCTTTTGCAACTGGGACACAGCAGAGTCAATTCATTTAATCCTCTCCAACAAT
CTGGAGAGGTAGATTTGAAATAACATCGCATGGGGTTGAGTTTTTTTGAGTGTGAGAGAA
CGCCAAGTATGCAGCTTAACCATTACCCTCAGAAGTTCGCAATGAAATGTTTTCCTCCAC
CTGTTTTTGCAAAGGGGGGCCTTCAGGTTCACATCCAGGTTCACTTAATGAATGCTTGTG
GATACCACCTCCTACCATGCAGGTGTTCTTCTGGGCCCTCACTCCAAAGTTTAGAGTTGC
GTGGAGGTGCTTATCAATCCTGCCCCTTCTTACAATGTCACAGGTCATAGGATGAGCCAG
GAATCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-267, + strand, RNAz p=0.805754

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-267, + strand, RNAz p=0.805754

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               183-270, + strand, RNAmicro p=0.993703

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               183-270, + strand, RNAmicro p=0.993703

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-546, gnl|bosTau2|chr1 (41032577-41033123)
               

               
               1-546, gnl|Hg17|chr3 (120497659-120498196)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-546, gnl|bosTau2|chr1 (41032577-41033123)
               

               
               1-546, gnl|Hg17|chr3 (120497659-120498196)

	1-546, gnl\|bosTau2\|chr1 (41032577-41033123)
	1-546, gnl\|Hg17\|chr3 (120497659-120498196)