Non-Coding RNA Search

Pig2-115O04

Sequence:


               
               ACTTTTATAACTTTTTATTGTAATTTATCATTAGGCAATTAAAAATCTTGGAAACAAGCA
CTTTGATATCAGCTTCTGTTACAGCATGTTGCTTAGCTCTTTTACACACTTTTCTTATTA
TCGTAATATAAATACTCATAGTATTATAATTAATAATCCTAATTCAGCAGTACAATACTG
ACCTTGTTTCGTTGAGAAATTTTTCCTTTTTTTCTTTCTTGTATTTATGTGGGGGATACA
CAATAGTCATTCACTTAATTAGGTTAATCAGTAGGAATGGATAATTTCACTTTTTGCCCC
TCAAAAGAAAATAAATTGTGCCAAATTTTCTTTGCAGTATAAACTGAAAGGGTTTATTGG
AGATCCTGCAAGGAAACTCTGAGGACTATTGTTGTGAAATGCTAGGAAGAAGGAAAAAGT
GAATTCTGAGTATGGAAACTTTAATTTAAAATTTTAAAAATTTAATGGAAAATATAATAA
TACTAAAGTCTATGTGCCTACTTCCCAGATTAAGAGACAAAACATTGTCCATTGAAGCCC
CTCATGTTTAGTAGGCAGATTGCATCTCTCTTCCCTCTTTTACCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTATAACTTTTTATTGTAATTTATCATTAGGCAATTAAAAATCTTGGAAACAAGCA
CTTTGATATCAGCTTCTGTTACAGCATGTTGCTTAGCTCTTTTACACACTTTTCTTATTA
TCGTAATATAAATACTCATAGTATTATAATTAATAATCCTAATTCAGCAGTACAATACTG
ACCTTGTTTCGTTGAGAAATTTTTCCTTTTTTTCTTTCTTGTATTTATGTGGGGGATACA
CAATAGTCATTCACTTAATTAGGTTAATCAGTAGGAATGGATAATTTCACTTTTTGCCCC
TCAAAAGAAAATAAATTGTGCCAAATTTTCTTTGCAGTATAAACTGAAAGGGTTTATTGG
AGATCCTGCAAGGAAACTCTGAGGACTATTGTTGTGAAATGCTAGGAAGAAGGAAAAAGT
GAATTCTGAGTATGGAAACTTTAATTTAAAATTTTAAAAATTTAATGGAAAATATAATAA
TACTAAAGTCTATGTGCCTACTTCCCAGATTAAGAGACAAAACATTGTCCATTGAAGCCC
CTCATGTTTAGTAGGCAGATTGCATCTCTCTTCCCTCTTTTACCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               327-437, - strand, RNAz p=0.794491

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               327-437, - strand, RNAz p=0.794491

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               115-506, gnl|bosTau2|chr4 (22241459-22241835)
               

               
               115-506, gnl|canFam2|chr18 (18252151-18251904)
               

               
               115-506, gnl|dasNov1|scaffold_148423 (3109-3298)
               

               
               115-506, gnl|hg17|chr7 (104316385-104316622)
               

               
               115-506, gnl|loxAfr1|scaffold_72514 (338-584)
               

               
               115-506, gnl|mm7|chr5 (22523161-22523401)
               

               
               115-506, gnl|monDom2|scaffold_30 (31329586-31329792)
               

               
               115-506, gnl|panTro1|chr6 (106150823-106151060)
               

               
               115-506, gnl|rheMac2|chr3 (142484240-142484473)
               

               
               115-506, gnl|rn3|chr4 (7063465-7063229)
               

               
               115-506, gnl|xenTro1|scaffold_386 (779500-779717)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-506, gnl|bosTau2|chr4 (22241459-22241835)
               

               
               115-506, gnl|canFam2|chr18 (18252151-18251904)
               

               
               115-506, gnl|dasNov1|scaffold_148423 (3109-3298)
               

               
               115-506, gnl|hg17|chr7 (104316385-104316622)
               

               
               115-506, gnl|loxAfr1|scaffold_72514 (338-584)
               

               
               115-506, gnl|mm7|chr5 (22523161-22523401)
               

               
               115-506, gnl|monDom2|scaffold_30 (31329586-31329792)
               

               
               115-506, gnl|panTro1|chr6 (106150823-106151060)
               

               
               115-506, gnl|rheMac2|chr3 (142484240-142484473)
               

               
               115-506, gnl|rn3|chr4 (7063465-7063229)
               

               
               115-506, gnl|xenTro1|scaffold_386 (779500-779717)

	115-506, gnl\|bosTau2\|chr4 (22241459-22241835)
	115-506, gnl\|canFam2\|chr18 (18252151-18251904)
	115-506, gnl\|dasNov1\|scaffold_148423 (3109-3298)
	115-506, gnl\|hg17\|chr7 (104316385-104316622)
	115-506, gnl\|loxAfr1\|scaffold_72514 (338-584)
	115-506, gnl\|mm7\|chr5 (22523161-22523401)
	115-506, gnl\|monDom2\|scaffold_30 (31329586-31329792)
	115-506, gnl\|panTro1\|chr6 (106150823-106151060)
	115-506, gnl\|rheMac2\|chr3 (142484240-142484473)
	115-506, gnl\|rn3\|chr4 (7063465-7063229)
	115-506, gnl\|xenTro1\|scaffold_386 (779500-779717)