Non-Coding RNA Search

Pig2-115P11

Sequence:


               
               GAAGGAAACCTTTTAATGTAGTGACTGATGTTTTCTGTATCAAAACAAGTGAGTGTCTAC
TTGCATTTATTTAGAGATACTAAGTAGAGGGAGAAGGAATGAAATTCCTTTTTGCCTCCC
TACCTAAGACAGCAAGGAGCACCCTCACCCTCTGTCCCTTGTCCTATGAAAGATGGTGAA
ATTGTGTTTTCCACAAGATGTTTGGAGAAGCCAGGACCATGGGAAAAACCATATACATTG
CAAATTCAGGCTCACGTTTCTTGCACATAGAAAACCATGTATCATTCAAGTGGAAAGAAG
TTTGAGTAGCTGATTCAAGGAAGAGCAGTGCCATTTGGGGGAATTTTCAGCCCCTCAAAG
TTTGCTATAAAAGTGGCAGGTCTGCTGTGCAGCCTTCTAAGATAACCTGGGACCAATCTG
CATTTTGAGGAAAGAACTCTGTAATACGCATGGGAAAAGACATTGTCAATAATAGGAAAC
TAGGGAAGACAGAAAGGAGGCAAGTTTCCTTGTAAGTGACTCTCCATGCTTCCTCACTGC
TGGACGCCTGTCCGCCTGCCCAGCACCTTGCTTATCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAAACCTTTTAATGTAGTGACTGATGTTTTCTGTATCAAAACAAGTGAGTGTCTAC
TTGCATTTATTTAGAGATACTAAGTAGAGGGAGAAGGAATGAAATTCCTTTTTGCCTCCC
TACCTAAGACAGCAAGGAGCACCCTCACCCTCTGTCCCTTGTCCTATGAAAGATGGTGAA
ATTGTGTTTTCCACAAGATGTTTGGAGAAGCCAGGACCATGGGAAAAACCATATACATTG
CAAATTCAGGCTCACGTTTCTTGCACATAGAAAACCATGTATCATTCAAGTGGAAAGAAG
TTTGAGTAGCTGATTCAAGGAAGAGCAGTGCCATTTGGGGGAATTTTCAGCCCCTCAAAG
TTTGCTATAAAAGTGGCAGGTCTGCTGTGCAGCCTTCTAAGATAACCTGGGACCAATCTG
CATTTTGAGGAAAGAACTCTGTAATACGCATGGGAAAAGACATTGTCAATAATAGGAAAC
TAGGGAAGACAGAAAGGAGGCAAGTTTCCTTGTAAGTGACTCTCCATGCTTCCTCACTGC
TGGACGCCTGTCCGCCTGCCCAGCACCTTGCTTATCTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-505, + strand, RNAz p=0.999518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-505, + strand, RNAz p=0.999518

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-579, gnl|bosTau2|chr4 (22462991-22463566)
               

               
               3-579, gnl|Hg17|chr7 (103360295-103359711)
               

               
               3-579, gnl|Mm7|chr5 (21524474-21523948)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-579, gnl|bosTau2|chr4 (22462991-22463566)
               

               
               3-579, gnl|Hg17|chr7 (103360295-103359711)
               

               
               3-579, gnl|Mm7|chr5 (21524474-21523948)

	3-579, gnl\|bosTau2\|chr4 (22462991-22463566)
	3-579, gnl\|Hg17\|chr7 (103360295-103359711)
	3-579, gnl\|Mm7\|chr5 (21524474-21523948)