Pig2-116H02
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GGATAACGCTTGCGCAGCTTGCAGAGCGTCCTCTTCGTCACGTGGCCCTGGAGTCCCGCT
TTGCCCGCTCCGCCCCCTATAAAACACCCCCAGCGAGGGAAGGCTGGTGTCCGGTCCTGA
GACCAACGACACCCAGACCCTCCGGGAAGACGGGATGGGAGATGCTGTCTAGACCGGCAA
GGTCGGCAGGGGGACCTGCCGGCCGTGCAGGTGGGATGTGGTACCAGAACGCTGGTACAA
CGCATCGAGGGGCCTATGAAACATGGCGCAGGTGCCCAGAGTGTGGGCACAACCTTCGTG
CCGCCGCGTCTTCCTGTGCGTCCTGGACTTCCCCGTCTGTTCAGTCCGCGTGACTCAGCC
CCCTGTAGTCCTGCTGTGCACCCGGCTTCTCACCAGCGCGGCTCGGCCAGGGAGGGGGTT
CCTCAGCACCTAGTAAATGCTTCCCTCCACGTCGCGAGCTGAGCCCGAGCCGCTGGAAAC
CCCTATTTTCTCACTAGTGAACGTCTTGTC
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGATAACGCTTGCGCAGCTTGCAGAGCGTCCTCTTCGTCACGTGGCCCTGGAGTCCCGCT
TTGCCCGCTCCGCCCCCTATAAAACACCCCCAGCGAGGGAAGGCTGGTGTCCGGTCCTGA
GACCAACGACACCCAGACCCTCCGGGAAGACGGGATGGGAGATGCTGTCTAGACCGGCAA
GGTCGGCAGGGGGACCTGCCGGCCGTGCAGGTGGGATGTGGTACCAGAACGCTGGTACAA
CGCATCGAGGGGCCTATGAAACATGGCGCAGGTGCCCAGAGTGTGGGCACAACCTTCGTG
CCGCCGCGTCTTCCTGTGCGTCCTGGACTTCCCCGTCTGTTCAGTCCGCGTGACTCAGCC
CCCTGTAGTCCTGCTGTGCACCCGGCTTCTCACCAGCGCGGCTCGGCCAGGGAGGGGGTT
CCTCAGCACCTAGTAAATGCTTCCCTCCACGTCGCGAGCTGAGCCCGAGCCGCTGGAAAC
CCCTATTTTCTCACTAGTGAACGTCTTGTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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218-280, + strand, RNAmicro p=0.99955 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
218-280, + strand, RNAmicro p=0.99955 |
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83-285, BovGen_13044 normal cattle brain Bos taurus cDNA clone (gb|CO884719.1|),
blast E-value=0, identity=100% |
|
83-285, BovGen_23412 normal cattle brain Bos taurus cDNA clone (gb|CO895087.1|),
blast E-value=0, identity=100% |
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83-285, 1243276 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288685.1|),
blast E-value=0, identity=100% |
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83-285, 1257924 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517382.1|),
blast E-value=0, identity=100% |
|
83-285, 1262800 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520096.1|),
blast E-value=0, identity=100% |
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83-285, 1464161 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899480.1|),
blast E-value=0, identity=100% |
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158-270, CR850888 Normalized and Subtracted bovine endometrium tissues
(emb|CR850888.2|), blast E-value=0, identity=100% |
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158-270, BovGen_23412 normal cattle brain Bos taurus cDNA clone
(gb|CO895087.1|), blast E-value=0, identity=100% |
|
158-270, 1243276 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288685.1|),
blast E-value=0, identity=100% |
|
158-270, 1257924 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517382.1|),
blast E-value=0, identity=100% |
|
158-270, 1262800 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520096.1|),
blast E-value=0, identity=100% |
|
158-270, 1464161 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899480.1|),
blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
83-285, BovGen_13044 normal cattle brain Bos taurus cDNA clone (gb|CO884719.1|),
blast E-value=0, identity=100% |
|
83-285, BovGen_23412 normal cattle brain Bos taurus cDNA clone (gb|CO895087.1|),
blast E-value=0, identity=100% |
|
83-285, 1243276 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288685.1|),
blast E-value=0, identity=100% |
|
83-285, 1257924 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517382.1|),
blast E-value=0, identity=100% |
|
83-285, 1262800 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520096.1|),
blast E-value=0, identity=100% |
|
83-285, 1464161 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899480.1|),
blast E-value=0, identity=100% |
|
158-270, CR850888 Normalized and Subtracted bovine endometrium tissues
(emb|CR850888.2|), blast E-value=0, identity=100% |
|
158-270, BovGen_23412 normal cattle brain Bos taurus cDNA clone
(gb|CO895087.1|), blast E-value=0, identity=100% |
|
158-270, 1243276 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288685.1|),
blast E-value=0, identity=100% |
|
158-270, 1257924 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN517382.1|),
blast E-value=0, identity=100% |
|
158-270, 1262800 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN520096.1|),
blast E-value=0, identity=100% |
|
158-270, 1464161 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899480.1|),
blast E-value=0, identity=100% |
Human gene identifier and UTR site,
human gene reading direction
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1-510, gnl|bosTau2|chr6 (68583324-68582815) |
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1-510, gnl|canFam2|chr3 (62657672-62658091) |
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1-510, gnl|dasNov1|scaffold_157944 (4361-3984) |
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1-510, gnl|hg17|chr4 (8085139-8085550) |
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1-510, gnl|Hg17|chr4 (8085747-8085167) |
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1-510, gnl|loxAfr1|scaffold_80275 (2646-2199) |
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1-510, gnl|mm7|chr5 (34947355-34947023) |
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1-510, gnl|oryCun1|scaffold_55018 (2812-2545) |
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1-510, gnl|panTro1|chr3 (8161796-8162207) |
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1-510, gnl|rn3|chr14 (80501423-80501754) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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1-510, gnl|bosTau2|chr6 (68583324-68582815) |
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1-510, gnl|canFam2|chr3 (62657672-62658091) |
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1-510, gnl|dasNov1|scaffold_157944 (4361-3984) |
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1-510, gnl|hg17|chr4 (8085139-8085550) |
|
1-510, gnl|Hg17|chr4 (8085747-8085167) |
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1-510, gnl|loxAfr1|scaffold_80275 (2646-2199) |
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1-510, gnl|mm7|chr5 (34947355-34947023) |
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1-510, gnl|oryCun1|scaffold_55018 (2812-2545) |
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1-510, gnl|panTro1|chr3 (8161796-8162207) |
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1-510, gnl|rn3|chr14 (80501423-80501754) |
