Non-Coding RNA Search

Pig2-117D01

Sequence:


               
               AGCCCAACGCCTACGCGGGCATCTTCCACTTCCACTTCTGGCGCTTCGGGGAGTGGGTGG
ATGTGGTCATTGATGACCGGCTGCCCACGGTCAACAACCAGCTCATCTACTGCCACTCCA
ACTCCCGCAATGAGTTCTGGTGTGCCTTGGTGGAGAAGGCCTACGCCAAACTGGCGGGCT
GTTACCAGGCCCTGGATGGGGGCAACACGGCAGATGCACTGGTGGACTTCACCGGGGGGG
TTTCCGAGCCCATCGACTTGACCGAGGGTGACTTCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCCAACGCCTACGCGGGCATCTTCCACTTCCACTTCTGGCGCTTCGGGGAGTGGGTGG
ATGTGGTCATTGATGACCGGCTGCCCACGGTCAACAACCAGCTCATCTACTGCCACTCCA
ACTCCCGCAATGAGTTCTGGTGTGCCTTGGTGGAGAAGGCCTACGCCAAACTGGCGGGCT
GTTACCAGGCCCTGGATGGGGGCAACACGGCAGATGCACTGGTGGACTTCACCGGGGGGG
TTTCCGAGCCCATCGACTTGACCGAGGGTGACTTCGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               32-169, + strand, RNAz p=0.955646

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-169, + strand, RNAz p=0.955646

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               33-150, - strand, RNAmicro p=0.999949

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               33-150, - strand, RNAmicro p=0.999949

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-169, gnl|bosTau2|chr15 (35554948-35555116)
               

               
               1-169, gnl|canFam2|chr21 (24644280-24644121)
               

               
               1-169, gnl|danRer3|chr21 (14796611-14796763)
               

               
               1-169, gnl|dasNov1|scaffold_206650 (4277-4118)
               

               
               1-169, gnl|fr1|chrUn (102817541-102817693)
               

               
               1-169, gnl|galGal2|chr1_random (213945-213786)
               

               
               1-169, gnl|hg17|chr11 (76501275-76501434)
               

               
               1-169, gnl|Hg17|chr11 (76501323-76501491)
               

               
               1-169, gnl|loxAfr1|scaffold_32479 (11017-10860)
               

               
               1-169, gnl|mm7|chr7 (94167880-94167721)
               

               
               1-169, gnl|Mm7|chr7 (94167830-94167662)
               

               
               1-169, gnl|monDom2|scaffold_46 (13339406-13339249)
               

               
               1-169, gnl|oryCun1|scaffold_199253 (150252-150411)
               

               
               1-169, gnl|panTro1|chr9 (77797116-77797275)
               

               
               1-169, gnl|rheMac2|chr14 (75292561-75292720)
               

               
               1-169, gnl|rn3|chr1 (155458075-155457916)
               

               
               1-169, gnl|tetNig1|chrUn_random (29627015-29627167)
               

               
               1-169, gnl|xenTro1|scaffold_694 (650125-650284)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-169, gnl|bosTau2|chr15 (35554948-35555116)
               

               
               1-169, gnl|canFam2|chr21 (24644280-24644121)
               

               
               1-169, gnl|danRer3|chr21 (14796611-14796763)
               

               
               1-169, gnl|dasNov1|scaffold_206650 (4277-4118)
               

               
               1-169, gnl|fr1|chrUn (102817541-102817693)
               

               
               1-169, gnl|galGal2|chr1_random (213945-213786)
               

               
               1-169, gnl|hg17|chr11 (76501275-76501434)
               

               
               1-169, gnl|Hg17|chr11 (76501323-76501491)
               

               
               1-169, gnl|loxAfr1|scaffold_32479 (11017-10860)
               

               
               1-169, gnl|mm7|chr7 (94167880-94167721)
               

               
               1-169, gnl|Mm7|chr7 (94167830-94167662)
               

               
               1-169, gnl|monDom2|scaffold_46 (13339406-13339249)
               

               
               1-169, gnl|oryCun1|scaffold_199253 (150252-150411)
               

               
               1-169, gnl|panTro1|chr9 (77797116-77797275)
               

               
               1-169, gnl|rheMac2|chr14 (75292561-75292720)
               

               
               1-169, gnl|rn3|chr1 (155458075-155457916)
               

               
               1-169, gnl|tetNig1|chrUn_random (29627015-29627167)
               

               
               1-169, gnl|xenTro1|scaffold_694 (650125-650284)

	1-169, gnl\|bosTau2\|chr15 (35554948-35555116)
	1-169, gnl\|canFam2\|chr21 (24644280-24644121)
	1-169, gnl\|danRer3\|chr21 (14796611-14796763)
	1-169, gnl\|dasNov1\|scaffold_206650 (4277-4118)
	1-169, gnl\|fr1\|chrUn (102817541-102817693)
	1-169, gnl\|galGal2\|chr1_random (213945-213786)
	1-169, gnl\|hg17\|chr11 (76501275-76501434)
	1-169, gnl\|Hg17\|chr11 (76501323-76501491)
	1-169, gnl\|loxAfr1\|scaffold_32479 (11017-10860)
	1-169, gnl\|mm7\|chr7 (94167880-94167721)
	1-169, gnl\|Mm7\|chr7 (94167830-94167662)
	1-169, gnl\|monDom2\|scaffold_46 (13339406-13339249)
	1-169, gnl\|oryCun1\|scaffold_199253 (150252-150411)
	1-169, gnl\|panTro1\|chr9 (77797116-77797275)
	1-169, gnl\|rheMac2\|chr14 (75292561-75292720)
	1-169, gnl\|rn3\|chr1 (155458075-155457916)
	1-169, gnl\|tetNig1\|chrUn_random (29627015-29627167)
	1-169, gnl\|xenTro1\|scaffold_694 (650125-650284)