Non-Coding RNA Search

Pig2-117H11

Sequence:


               
               ATAAGTCACTGAACATACATCAAAACATACTTTCCAGCTCTATTATAGATAACTATTGTT
ACTGCTTCATTGTGGAAATGATGGTTAAGGGATCTTTGTTTTCTTACTGGAAAGTCAATC
TAACCCAATTTAACCAGATCCTGCAGTGTTGCTAACTNGAAAAGTTTCAGTTACAGATTA
GCCTCAGCTAATTAGCCTCAAGCTTCAGGAGCAATTACCCATGTATGAGAAACAACAAAA
ACCTATTCCAGTGTTTAAAGTTTTGATCATCCAGAAACTATAATCTCTATTGCTTTATAT
GACATTTCCTTCTATTTTTGCCCTGTCAGTTTTAACTGTAGAAACAAGAAGAAAATGTAT
TTTCTTGCTTGGTGGGTAAAGATGGCTTATTTAATTCTTACAAAGGAGAGTAGAGGAAGG
TGAGAAATTTTTGTGTTTTTTGGGGTTTTGTTTTTTGCTGTGCCTGCGTCTTACTgaagt
tccccagccagggatcaaacccgcactacagcagtgacatgagtgacagtagtgacaatg
ccagatccttaaccTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGTCACTGAACATACATCAAAACATACTTTCCAGCTCTATTATAGATAACTATTGTT
ACTGCTTCATTGTGGAAATGATGGTTAAGGGATCTTTGTTTTCTTACTGGAAAGTCAATC
TAACCCAATTTAACCAGATCCTGCAGTGTTGCTAACTNGAAAAGTTTCAGTTACAGATTA
GCCTCAGCTAATTAGCCTCAAGCTTCAGGAGCAATTACCCATGTATGAGAAACAACAAAA
ACCTATTCCAGTGTTTAAAGTTTTGATCATCCAGAAACTATAATCTCTATTGCTTTATAT
GACATTTCCTTCTATTTTTGCCCTGTCAGTTTTAACTGTAGAAACAAGAAGAAAATGTAT
TTTCTTGCTTGGTGGGTAAAGATGGCTTATTTAATTCTTACAAAGGAGAGTAGAGGAAGG
TGAGAAATTTTTGTGTTTTTTGGGGTTTTGTTTTTTGCTGTGCCTGCGTCTTACTgaagt
tccccagccagggatcaaacccgcactacagcagtgacatgagtgacagtagtgacaatg
ccagatccttaaccTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-160, + strand, RNAz p=0.584631

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-160, + strand, RNAz p=0.584631

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY574904, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY574904, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-184, gnl|bosTau2|chr2 (38532212-38532384)
               

               
               3-184, gnl|Hg17|chr2 (135556161-135555986)
               

               
               3-184, gnl|Mm7|chr1 (127694808-127694647)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-184, gnl|bosTau2|chr2 (38532212-38532384)
               

               
               3-184, gnl|Hg17|chr2 (135556161-135555986)
               

               
               3-184, gnl|Mm7|chr1 (127694808-127694647)

	3-184, gnl\|bosTau2\|chr2 (38532212-38532384)
	3-184, gnl\|Hg17\|chr2 (135556161-135555986)
	3-184, gnl\|Mm7\|chr1 (127694808-127694647)