Non-Coding RNA Search

Pig2-117H24

Sequence:


               
               GTGGACAGTGACAAGGATGGCAACCTTGCTCCTCGGTGGCACCTGGGACCTGGAGATCCT
TTCTCCACTTACGTTTAGCGCGCAGCCTGGGACTTGTCCCTGCAGCTCACCGGGTTAGCC
GTGCCGCCGCTGGGACCTCCCACCTGGACTCCCATCACCCACCTCTCTTGAGACTGCTCT
GGCAGGGCTGGCGTGGGGTGCAGCCTCTGCCCAGAGGGCAACATGTTCCAAGCAAAATCT
GCCCCCCGGGCCATGGGCTCACCCCTCGGGGCCCCTTGCTTCTCTACTGGGTGCAATTCG
AGGTTGCCAAGCTTCTCTCCAAAGTCTAAAATGGTGGGACAGTCGGAACCTGTGAGAGGC
CCCCCTGGCCCGATGCTGTCCCCCAGCTCCCAGCCTGAGCACCAGGCACCCCCAGGCCCA
TGCTGCCCTCCAGGTCTGCCATGTGAATGGGCAGGTTTGGTAGACGGATGCACTTGTCCC
TGGAGTTTTCCTCCAGGTTGAACGTTACTATTGTCAGTGGCCCCCACTGGAAAAACCCAG
CGTTCTGATCTAGCCCGCATCCCCCCAGTCACGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGACAGTGACAAGGATGGCAACCTTGCTCCTCGGTGGCACCTGGGACCTGGAGATCCT
TTCTCCACTTACGTTTAGCGCGCAGCCTGGGACTTGTCCCTGCAGCTCACCGGGTTAGCC
GTGCCGCCGCTGGGACCTCCCACCTGGACTCCCATCACCCACCTCTCTTGAGACTGCTCT
GGCAGGGCTGGCGTGGGGTGCAGCCTCTGCCCAGAGGGCAACATGTTCCAAGCAAAATCT
GCCCCCCGGGCCATGGGCTCACCCCTCGGGGCCCCTTGCTTCTCTACTGGGTGCAATTCG
AGGTTGCCAAGCTTCTCTCCAAAGTCTAAAATGGTGGGACAGTCGGAACCTGTGAGAGGC
CCCCCTGGCCCGATGCTGTCCCCCAGCTCCCAGCCTGAGCACCAGGCACCCCCAGGCCCA
TGCTGCCCTCCAGGTCTGCCATGTGAATGGGCAGGTTTGGTAGACGGATGCACTTGTCCC
TGGAGTTTTCCTCCAGGTTGAACGTTACTATTGTCAGTGGCCCCCACTGGAAAAACCCAG
CGTTCTGATCTAGCCCGCATCCCCCCAGTCACGGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34533647|dbj|BAC86761.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34533647|dbj|BAC86761.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-314, + strand, RNAz p=0.736777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-314, + strand, RNAz p=0.736777

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003947, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003947, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               102-407, gnl|bosTau2|chr1 (38641324-38641009)
               

               
               102-407, gnl|Hg17|chr3 (125720003-125720338)
               

               
               102-407, gnl|Mm7|chr16 (33828996-33828655)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-407, gnl|bosTau2|chr1 (38641324-38641009)
               

               
               102-407, gnl|Hg17|chr3 (125720003-125720338)
               

               
               102-407, gnl|Mm7|chr16 (33828996-33828655)

	102-407, gnl\|bosTau2\|chr1 (38641324-38641009)
	102-407, gnl\|Hg17\|chr3 (125720003-125720338)
	102-407, gnl\|Mm7\|chr16 (33828996-33828655)