Non-Coding RNA Search

Pig2-117N18

Sequence:


               
               AGAAGATCTCTTACAACTGCTGCAGCCAGGGCACCATCTGCCTGCAAATCCAAATGGAAA
AGAACACCTTCGTGCCGGGAGAGAAGGTCATTTTCACCACGGAGATCAACAACCAGACGA
GCAAGTGCATAAGGACGGTCATCTTTGCCCTCTACGCCCATGTGCAGTACGAGGGCTTCA
CGCCCAAGGCCGAGCGGCGCTCAAAGGTGGACAGCAGCGAGCTGCTTCGGCAGGAGGCCA
ACACCCAGATCACGCCCTTCAACACCACCAAGATCGTCAGCACCTTCCACCTCCCGCCCG
TGCTGTCCGTGAGCGGCGGCGCTCGGGACAACGAGATCATGAACACCCACTATGAGCTGA
TCAGCACCATCCACCTGCCCTGGTCCCTGACCAGTGTCAAGGCCAAGGTGCCCATCATCA
TCACCAGTGCCCCTGTGGACGCGGACAGCTGTCGGTTGCTGGAGGGGGCGGTGTTGCCCA
AGAGCCCAGATGGATCGTCAGATTTAAATGCACAAACAAATACGTATTAAAAGCTTTATC
AGACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGATCTCTTACAACTGCTGCAGCCAGGGCACCATCTGCCTGCAAATCCAAATGGAAA
AGAACACCTTCGTGCCGGGAGAGAAGGTCATTTTCACCACGGAGATCAACAACCAGACGA
GCAAGTGCATAAGGACGGTCATCTTTGCCCTCTACGCCCATGTGCAGTACGAGGGCTTCA
CGCCCAAGGCCGAGCGGCGCTCAAAGGTGGACAGCAGCGAGCTGCTTCGGCAGGAGGCCA
ACACCCAGATCACGCCCTTCAACACCACCAAGATCGTCAGCACCTTCCACCTCCCGCCCG
TGCTGTCCGTGAGCGGCGGCGCTCGGGACAACGAGATCATGAACACCCACTATGAGCTGA
TCAGCACCATCCACCTGCCCTGGTCCCTGACCAGTGTCAAGGCCAAGGTGCCCATCATCA
TCACCAGTGCCCCTGTGGACGCGGACAGCTGTCGGTTGCTGGAGGGGGCGGTGTTGCCCA
AGAGCCCAGATGGATCGTCAGATTTAAATGCACAAACAAATACGTATTAAAAGCTTTATC
AGACTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57101464|ref|XP_533947.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101464|ref|XP_533947.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               320-436, - strand, RNAz p=0.746518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-436, - strand, RNAz p=0.746518

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-547, gnl|bosTau2|chr7 (14766753-14767304)
               

               
               1-547, gnl|Hg17|chr19 (4842560-4842018)
               

               
               1-547, gnl|Mm7|chr17 (54452888-54452356)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-547, gnl|bosTau2|chr7 (14766753-14767304)
               

               
               1-547, gnl|Hg17|chr19 (4842560-4842018)
               

               
               1-547, gnl|Mm7|chr17 (54452888-54452356)

	1-547, gnl\|bosTau2\|chr7 (14766753-14767304)
	1-547, gnl\|Hg17\|chr19 (4842560-4842018)
	1-547, gnl\|Mm7\|chr17 (54452888-54452356)