Non-Coding RNA Search

Pig2-118I08

Sequence:


               
               ATGCATATGTTGCTTCCTACTATGTGTCAGGCCCCATGTGAAGTATTGGGGTGCAGAGCT
AAATAAGCTACAGTCCAGCCCTCAGGGAGCATACAGGCTGAGTGGAGGAGACCACCAAGG
ACAGGAGCCCACCCCAGAAATGGTTCTTGGCACCTCCTCCAGGAATCTCCCATTGCTGAT
CTCACTGCCCAGTTATTCCATCTCCCAGACCATCCAGAATCCTGATGTCCAACCACACAA
GCATTCTTCATCCGGCACATTTTCCAACACCTGTTTTTGACAGACCTCCAGAATTAGTAC
TTACGTAACAGTTTTCAGACCACATGTGGAACAGCAATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCATATGTTGCTTCCTACTATGTGTCAGGCCCCATGTGAAGTATTGGGGTGCAGAGCT
AAATAAGCTACAGTCCAGCCCTCAGGGAGCATACAGGCTGAGTGGAGGAGACCACCAAGG
ACAGGAGCCCACCCCAGAAATGGTTCTTGGCACCTCCTCCAGGAATCTCCCATTGCTGAT
CTCACTGCCCAGTTATTCCATCTCCCAGACCATCCAGAATCCTGATGTCCAACCACACAA
GCATTCTTCATCCGGCACATTTTCCAACACCTGTTTTTGACAGACCTCCAGAATTAGTAC
TTACGTAACAGTTTTCAGACCACATGTGGAACAGCAATGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872396|ref|XP_611579.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872396|ref|XP_611579.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, - strand, RNAz p=0.550354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.550354

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-303, gnl|bosTau2|chr3 (56631872-56632173)
               

               
               3-303, gnl|canFam2|chr5 (50757219-50756970)
               

               
               3-303, gnl|echTel1|scaffold_250577 (2716-2868)
               

               
               3-303, gnl|hg17|chr1 (62524533-62524773)
               

               
               3-303, gnl|Hg17|chr1 (62524550-62524838)
               

               
               3-303, gnl|loxAfr1|scaffold_63202 (3166-2917)
               

               
               3-303, gnl|mm7|chr4 (98227446-98227639)
               

               
               3-303, gnl|oryCun1|scaffold_211801 (135814-135596)
               

               
               3-303, gnl|panTro1|chr1_random (72071585-72071345)
               

               
               3-303, gnl|rheMac2|chr1 (65159615-65159855)
               

               
               3-303, gnl|rn3|chr5 (119252322-119252512)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-303, gnl|bosTau2|chr3 (56631872-56632173)
               

               
               3-303, gnl|canFam2|chr5 (50757219-50756970)
               

               
               3-303, gnl|echTel1|scaffold_250577 (2716-2868)
               

               
               3-303, gnl|hg17|chr1 (62524533-62524773)
               

               
               3-303, gnl|Hg17|chr1 (62524550-62524838)
               

               
               3-303, gnl|loxAfr1|scaffold_63202 (3166-2917)
               

               
               3-303, gnl|mm7|chr4 (98227446-98227639)
               

               
               3-303, gnl|oryCun1|scaffold_211801 (135814-135596)
               

               
               3-303, gnl|panTro1|chr1_random (72071585-72071345)
               

               
               3-303, gnl|rheMac2|chr1 (65159615-65159855)
               

               
               3-303, gnl|rn3|chr5 (119252322-119252512)

	3-303, gnl\|bosTau2\|chr3 (56631872-56632173)
	3-303, gnl\|canFam2\|chr5 (50757219-50756970)
	3-303, gnl\|echTel1\|scaffold_250577 (2716-2868)
	3-303, gnl\|hg17\|chr1 (62524533-62524773)
	3-303, gnl\|Hg17\|chr1 (62524550-62524838)
	3-303, gnl\|loxAfr1\|scaffold_63202 (3166-2917)
	3-303, gnl\|mm7\|chr4 (98227446-98227639)
	3-303, gnl\|oryCun1\|scaffold_211801 (135814-135596)
	3-303, gnl\|panTro1\|chr1_random (72071585-72071345)
	3-303, gnl\|rheMac2\|chr1 (65159615-65159855)
	3-303, gnl\|rn3\|chr5 (119252322-119252512)