Non-Coding RNA Search

Pig2-118O03

Sequence:


               
               TCAACAGAACCCTCTCTTTCCCACCGTTGGGAGCTACCCCCAAGCCCCCGACACCCGCCT
CGCCTGCACTGGTGACGAGAGACCAAAACGTCAACCCAGGTCCCTCCCATAGGATTCATT
CTCAGAGCATCGCTCAGGTGGACCTCGGTCCTCCGGCGCCTCCGCTGTTGCCCGCTCCCC
GGACCACAGCCCCCCCGTCCACGAACGTCCGGAACCTTCCTGCGGCCTTCTCCACCCGGA
GCTCCGTCCCTTCCCTGACGCCTTCCGCCCAGCCCTCCAGAAGCGTCCATCACAGCAGCC
TCAAGCTCTTCTCTGCTGCAGGACCACCCGCATCCAAATTCTGGACCCTGGGGGAGAAGC
CCCACATCGTCACCAAGTCTCCTCCCTCTGTGACTGTCACCGCGGAGACAGACGTTGTGT
TCCCTTGTGAGGCAACAGGCCAACCCCAGCCTTTTGTGACCTGGACAAAGGTGTCCACAG
GCGCTCTCATGACCCCAAACACCAGAGTGCAGCGGTTTGAAGTCCTGAAGAATGGCACTT
TCGTCATCCGAAACGTGCAGGTGCAGGACGGGGGCCAGTACATGTGCACCGCCAAAAACC
TGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAACAGAACCCTCTCTTTCCCACCGTTGGGAGCTACCCCCAAGCCCCCGACACCCGCCT
CGCCTGCACTGGTGACGAGAGACCAAAACGTCAACCCAGGTCCCTCCCATAGGATTCATT
CTCAGAGCATCGCTCAGGTGGACCTCGGTCCTCCGGCGCCTCCGCTGTTGCCCGCTCCCC
GGACCACAGCCCCCCCGTCCACGAACGTCCGGAACCTTCCTGCGGCCTTCTCCACCCGGA
GCTCCGTCCCTTCCCTGACGCCTTCCGCCCAGCCCTCCAGAAGCGTCCATCACAGCAGCC
TCAAGCTCTTCTCTGCTGCAGGACCACCCGCATCCAAATTCTGGACCCTGGGGGAGAAGC
CCCACATCGTCACCAAGTCTCCTCCCTCTGTGACTGTCACCGCGGAGACAGACGTTGTGT
TCCCTTGTGAGGCAACAGGCCAACCCCAGCCTTTTGTGACCTGGACAAAGGTGTCCACAG
GCGCTCTCATGACCCCAAACACCAGAGTGCAGCGGTTTGAAGTCCTGAAGAATGGCACTT
TCGTCATCCGAAACGTGCAGGTGCAGGACGGGGGCCAGTACATGTGCACCGCCAAAAACC
TGCAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               160-279, - strand, RNAz p=0.970733
               

               
               360-481, - strand, RNAz p=0.620608

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.970733
               

               
               360-481, - strand, RNAz p=0.620608

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-481, gnl|bosTau2|chrX (48306949-48307429)
               

               
               1-481, gnl|Hg17|chrX (3231886-3231409)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chrX (48306949-48307429)
               

               
               1-481, gnl|Hg17|chrX (3231886-3231409)

	160-279, - strand, RNAz p=0.970733
	360-481, - strand, RNAz p=0.620608

	1-481, gnl\|bosTau2\|chrX (48306949-48307429)
	1-481, gnl\|Hg17\|chrX (3231886-3231409)