Pig2-119F12
|
GGAAGATGGCGGTGCCGTAGCCGCGCCGATAGGTGGAGTGCAGGCCGTGGCCGTCCGCTC
GGCTGGGAGAACAGGCCGTCCCGCTGGTGACCGCCCTCTGTGTATGACCTTGGCAGCCGG
GCACCATGGACCTGGCGTACGTCTGTGAGTGGGAGAAATGGCCCAAGAGCACGCACTGCC
CTTCGGTGCCCCTGGCCTGTGCCTGGTCCTGCCGCAACCTCATCGCCTTTACCACGGATC
TCCGAAACGACGACCAGGACCTGACCCGCATGATCCACATCCTGGATACGGAGCACCCCT
GGGACGTGCACTCCATCAACTCGGAGCACAGCGAGGCCATCACCTGCCTCGAGTGGGACC
AGTCAGGCTCCCGGCTGCTGTCGGCCGATGCTGATGGGCAGATCAAGTGCTGGACCATGG
CAGACCACCTGGCCAACAGCTGGGAGAGCCCAGTGGGCAGCCTGGTGGAGGGGGACCCCA
TCGTGGCCTTGTCCTGGCTGCACAATGGTGTGAAGCTGGCCCTGCACGTGGAAAAGTCGG
CCGCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAGATGGCGGTGCCGTAGCCGCGCCGATAGGTGGAGTGCAGGCCGTGGCCGTCCGCTC
GGCTGGGAGAACAGGCCGTCCCGCTGGTGACCGCCCTCTGTGTATGACCTTGGCAGCCGG
GCACCATGGACCTGGCGTACGTCTGTGAGTGGGAGAAATGGCCCAAGAGCACGCACTGCC
CTTCGGTGCCCCTGGCCTGTGCCTGGTCCTGCCGCAACCTCATCGCCTTTACCACGGATC
TCCGAAACGACGACCAGGACCTGACCCGCATGATCCACATCCTGGATACGGAGCACCCCT
GGGACGTGCACTCCATCAACTCGGAGCACAGCGAGGCCATCACCTGCCTCGAGTGGGACC
AGTCAGGCTCCCGGCTGCTGTCGGCCGATGCTGATGGGCAGATCAAGTGCTGGACCATGG
CAGACCACCTGGCCAACAGCTGGGAGAGCCCAGTGGGCAGCCTGGTGGAGGGGGACCCCA
TCGTGGCCTTGTCCTGGCTGCACAATGGTGTGAAGCTGGCCCTGCACGTGGAAAAGTCGG
CCGCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
83-256, gnl|bosTau2|chr7 (29268319-29268492) |
|
83-256, gnl|Hg17|chr19 (842147-841965) |
|
83-256, gnl|Mm7|chr10 (79687670-79687509) |
| |
|
364-536, gnl|bosTau2|chr7 (29269394-29269566) |
|
364-536, gnl|canFam2|chr20 (60915521-60915312) |
|
364-536, gnl|danRer3|chrUn (59959034-59958861) |
|
364-536, gnl|dasNov1|scaffold_152243 (2057-1847) |
|
364-536, gnl|fr1|chrUn (240120101-240119869) |
|
364-536, gnl|galGal2|chr28 (2744979-2745176) |
|
364-536, gnl|hg17|chr19 (840614-840823) |
|
364-536, gnl|Hg17|chr19 (840810-840638) |
|
364-536, gnl|loxAfr1|scaffold_231751 (125-334) |
|
364-536, gnl|mm7|chr10 (79686763-79686960) |
|
364-536, gnl|Mm7|chr10 (79686953-79686781) |
|
364-536, gnl|monDom2|scaffold_75 (7579519-7579330) |
|
364-536, gnl|panTro1|chr20 (896889-897098) |
|
364-536, gnl|rheMac2|chr19 (626984-627193) |
|
364-536, gnl|rn3|chr7 (11313018-11312816) |
|
364-536, gnl|tetNig1|chrUn_random (107314748-107314561) |
|
364-536, gnl|xenTro1|scaffold_342 (1186050-1185870) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
83-256, gnl|bosTau2|chr7 (29268319-29268492) |
|
83-256, gnl|Hg17|chr19 (842147-841965) |
|
83-256, gnl|Mm7|chr10 (79687670-79687509) |
| |
|
364-536, gnl|bosTau2|chr7 (29269394-29269566) |
|
364-536, gnl|canFam2|chr20 (60915521-60915312) |
|
364-536, gnl|danRer3|chrUn (59959034-59958861) |
|
364-536, gnl|dasNov1|scaffold_152243 (2057-1847) |
|
364-536, gnl|fr1|chrUn (240120101-240119869) |
|
364-536, gnl|galGal2|chr28 (2744979-2745176) |
|
364-536, gnl|hg17|chr19 (840614-840823) |
|
364-536, gnl|Hg17|chr19 (840810-840638) |
|
364-536, gnl|loxAfr1|scaffold_231751 (125-334) |
|
364-536, gnl|mm7|chr10 (79686763-79686960) |
|
364-536, gnl|Mm7|chr10 (79686953-79686781) |
|
364-536, gnl|monDom2|scaffold_75 (7579519-7579330) |
|
364-536, gnl|panTro1|chr20 (896889-897098) |
|
364-536, gnl|rheMac2|chr19 (626984-627193) |
|
364-536, gnl|rn3|chr7 (11313018-11312816) |
|
364-536, gnl|tetNig1|chrUn_random (107314748-107314561) |
|
364-536, gnl|xenTro1|scaffold_342 (1186050-1185870) |
