Non-Coding RNA Search

Pig2-119I17

Sequence:


               
               GACGGCAGTCCCTACGCGCACATGTTTGAGATGCCGGCCAGCGAGAGCACGTTCGGCAAC
GGCAAGGCGGCGGCGCCGGCCGCGGGACATCACCATCACAGCAACCCCGGCGGAGGCTAC
ATGCTCAGCAAGTCGCTCTACCCCGACCGGGTCACGCAGAACCCTTTCATCCCCACTTTC
GGGGACGACCAGTGCTTGCTCCATGGCAGCAAATCCTACTTCTTCAGGCAGCCCACGGTG
GCTGGGGCGCCGAAAGCCAGGCCGGACTTCCGGGCCCTTGTCACCAACAAGCCGGTGGTC
TCGGCCCTACATGGGGCTGTGCCAGGCCGCTTCCAGAAAGACATCTGTATAGGGAACCAG
TCCAACCCCTGTGTGCCTAACAACAAAAACCCCAGGGCTTTCAATGGCTCCAGCAATGGG
CATGTGTATGAGAAACTGTCTAGTATTGAGTCTGATGTCTGAGTGAGGGAAGAGAGAGGC
GAAGGTGGGTACGGGAGGGTTGGGCTGTGGGCGTGTGGTGCGCATGTCACGGAGGGTGAC
GGGGGTGAACTTGGTTCCCATTTGCTCCTTTCTTGTCGTTTTCATTTATTTATGGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGGCAGTCCCTACGCGCACATGTTTGAGATGCCGGCCAGCGAGAGCACGTTCGGCAAC
GGCAAGGCGGCGGCGCCGGCCGCGGGACATCACCATCACAGCAACCCCGGCGGAGGCTAC
ATGCTCAGCAAGTCGCTCTACCCCGACCGGGTCACGCAGAACCCTTTCATCCCCACTTTC
GGGGACGACCAGTGCTTGCTCCATGGCAGCAAATCCTACTTCTTCAGGCAGCCCACGGTG
GCTGGGGCGCCGAAAGCCAGGCCGGACTTCCGGGCCCTTGTCACCAACAAGCCGGTGGTC
TCGGCCCTACATGGGGCTGTGCCAGGCCGCTTCCAGAAAGACATCTGTATAGGGAACCAG
TCCAACCCCTGTGTGCCTAACAACAAAAACCCCAGGGCTTTCAATGGCTCCAGCAATGGG
CATGTGTATGAGAAACTGTCTAGTATTGAGTCTGATGTCTGAGTGAGGGAAGAGAGAGGC
GAAGGTGGGTACGGGAGGGTTGGGCTGTGGGCGTGTGGTGCGCATGTCACGGAGGGTGAC
GGGGGTGAACTTGGTTCCCATTTGCTCCTTTCTTGTCGTTTTCATTTATTTATGGGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               71-344, - strand, RNAz p=0.951904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-344, - strand, RNAz p=0.951904

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-598, gnl|bosTau2|chr5 (56225089-56225712)
               

               
               1-598, gnl|Hg17|chr12 (13607445-13606850)
               

               
               1-598, gnl|Mm7|chr6 (135747389-135746787)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr5 (56225089-56225712)
               

               
               1-598, gnl|Hg17|chr12 (13607445-13606850)
               

               
               1-598, gnl|Mm7|chr6 (135747389-135746787)

	1-598, gnl\|bosTau2\|chr5 (56225089-56225712)
	1-598, gnl\|Hg17\|chr12 (13607445-13606850)
	1-598, gnl\|Mm7\|chr6 (135747389-135746787)