Pig2-119P07
|
GGCCAGCTGGCTGGACATGTACTGCCACATGGGCTAGGGACTCCATTCCTCAACAAAACA
GCAGCCAGCACTAGGGTTAACAGAAAATGACAAACCAGGCATGGATGAGGGAGGCGCCAG
CAGAGCAGCGGGATGTCCTTTGATTTGCTTCTGTTATTTGCATGTCTTTCTTGTGATGTC
TGTGAAATGTTCAGAATGACAAAGTTTTTAAAAGACCTGCTGACTCCGCCTGAAAAATGT
GAAAAACCTCCCATTTAGAGACCCATTATGTCCAGCTAGCCTGCATTTTCTATATCTTTT
TCTTCATTTTTTATTAATGCAAACATTTGCATGAAGACAGAACCTTTGTTTCTTAAAGAG
TTCATCTGCTCCTGCTGCTTACTGGCCCTGCCATGCAAGAGCACAACAGAACCTTTGTTA
CGCTTTCAGCAAAGCTGTTTATGAACGGTGGCTTACTGAGGACTGCTTCCTGTGCTGTGT
GCTTCCATTTTGTCTAAAAGAAAAAAAAGAAAATAGTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCCAGCTGGCTGGACATGTACTGCCACATGGGCTAGGGACTCCATTCCTCAACAAAACA
GCAGCCAGCACTAGGGTTAACAGAAAATGACAAACCAGGCATGGATGAGGGAGGCGCCAG
CAGAGCAGCGGGATGTCCTTTGATTTGCTTCTGTTATTTGCATGTCTTTCTTGTGATGTC
TGTGAAATGTTCAGAATGACAAAGTTTTTAAAAGACCTGCTGACTCCGCCTGAAAAATGT
GAAAAACCTCCCATTTAGAGACCCATTATGTCCAGCTAGCCTGCATTTTCTATATCTTTT
TCTTCATTTTTTATTAATGCAAACATTTGCATGAAGACAGAACCTTTGTTTCTTAAAGAG
TTCATCTGCTCCTGCTGCTTACTGGCCCTGCCATGCAAGAGCACAACAGAACCTTTGTTA
CGCTTTCAGCAAAGCTGTTTATGAACGGTGGCTTACTGAGGACTGCTTCCTGTGCTGTGT
GCTTCCATTTTGTCTAAAAGAAAAAAAAGAAAATAGTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
307-489, - strand, RNAmicro p=0.997978 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
307-489, - strand, RNAmicro p=0.997978 |
|
280-439, ol40e01.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone
(gb|AA910045.1|), blast E-value=0, identity=97.5% |
|
280-439, qa99b04.s1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone
(gb|AI123967.1|), blast E-value=0, identity=96.25% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
280-439, ol40e01.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone
(gb|AA910045.1|), blast E-value=0, identity=97.5% |
|
280-439, qa99b04.s1 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone
(gb|AI123967.1|), blast E-value=0, identity=96.25% |
|
1-520, gnl|bosTau2|chr15 (49286933-49286416) |
|
1-520, gnl|canFam2|chr18 (45606968-45605952) |
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1-520, gnl|dasNov1|scaffold_6589 (8372-7356) |
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1-520, gnl|echTel1|scaffold_256322 (1443-2459) |
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1-520, gnl|hg17|chr11 (46955091-46956113) |
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1-520, gnl|Hg17|chr11 (46955315-46955834) |
|
1-520, gnl|loxAfr1|scaffold_100218 (4162-3153) |
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1-520, gnl|mm7|chr2 (91281684-91280691) |
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1-520, gnl|Mm7|chr2 (91281466-91280960) |
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1-520, gnl|monDom2|scaffold_33 (12905207-12906226) |
|
1-520, gnl|oryCun1|scaffold_141205 (727-1742) |
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1-520, gnl|panTro1|chr9 (47476003-47477022) |
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1-520, gnl|rheMac2|chr14 (25145507-25144488) |
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1-520, gnl|rn3|chr3 (75687187-75686186) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-520, gnl|bosTau2|chr15 (49286933-49286416) |
|
1-520, gnl|canFam2|chr18 (45606968-45605952) |
|
1-520, gnl|dasNov1|scaffold_6589 (8372-7356) |
|
1-520, gnl|echTel1|scaffold_256322 (1443-2459) |
|
1-520, gnl|hg17|chr11 (46955091-46956113) |
|
1-520, gnl|Hg17|chr11 (46955315-46955834) |
|
1-520, gnl|loxAfr1|scaffold_100218 (4162-3153) |
|
1-520, gnl|mm7|chr2 (91281684-91280691) |
|
1-520, gnl|Mm7|chr2 (91281466-91280960) |
|
1-520, gnl|monDom2|scaffold_33 (12905207-12906226) |
|
1-520, gnl|oryCun1|scaffold_141205 (727-1742) |
|
1-520, gnl|panTro1|chr9 (47476003-47477022) |
|
1-520, gnl|rheMac2|chr14 (25145507-25144488) |
|
1-520, gnl|rn3|chr3 (75687187-75686186) |
