Non-Coding RNA Search

Pig2-11G10

Sequence:


               
               GGAACTGACCATGACAGGTTGAAGGCCTTTCCCTATCAGCACTAGGGCTACACATTTCCC
CTGACTGGGCTGCCCTTGGCTTTTCTTCGTAAAACCTCAGAAGCCCCATGGCCTCTCCCC
CAGAAGTACATGGCCCCTGGGTCTCTAGGCCTCAACTGGAGGTTTCCCTGGGGCAGATTA
CGCAGGACGTGTGCCTGGGAAAGGGACTTTATCCTCAAGCTCCCTGCTGCCCCTCTGCTT
CCAGCCTTTTCTTGGATAGGGACAGGTAGTAGTTGCCCTAGGCTCTGGTGAGAAGGCCTC
CAGGTTCTAATTTCCTGCCGCACATTGAATGGTAGAAGGACCACGTAAAGAAGAGTTGGA
ATTGGCGGGGGGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACTGACCATGACAGGTTGAAGGCCTTTCCCTATCAGCACTAGGGCTACACATTTCCC
CTGACTGGGCTGCCCTTGGCTTTTCTTCGTAAAACCTCAGAAGCCCCATGGCCTCTCCCC
CAGAAGTACATGGCCCCTGGGTCTCTAGGCCTCAACTGGAGGTTTCCCTGGGGCAGATTA
CGCAGGACGTGTGCCTGGGAAAGGGACTTTATCCTCAAGCTCCCTGCTGCCCCTCTGCTT
CCAGCCTTTTCTTGGATAGGGACAGGTAGTAGTTGCCCTAGGCTCTGGTGAGAAGGCCTC
CAGGTTCTAATTTCCTGCCGCACATTGAATGGTAGAAGGACCACGTAAAGAAGAGTTGGA
ATTGGCGGGGGGTGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               161-320, + strand, RNAz p=0.856574

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-320, + strand, RNAz p=0.856574

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               2-364, gnl|bosTau2|chrX (26183688-26184049)
               

               
               2-364, gnl|canFam2|chrX (42043760-42044166)
               

               
               2-364, gnl|dasNov1|scaffold_23272 (16037-16439)
               

               
               2-364, gnl|echTel1|scaffold_323080 (98597-98244)
               

               
               2-364, gnl|hg17|chrX (48555034-48555426)
               

               
               2-364, gnl|Hg17|chrX (48555541-48555186)
               

               
               2-364, gnl|loxAfr1|scaffold_61071 (5740-6128)
               

               
               2-364, gnl|mm7|chrX (6293087-6292646)
               

               
               2-364, gnl|Mm7|chrX (6292531-6292885)
               

               
               2-364, gnl|oryCun1|scaffold_190599 (56522-56167)
               

               
               2-364, gnl|panTro1|chrX (49890372-49890774)
               

               
               2-364, gnl|rheMac2|chrX (46798970-46799386)
               

               
               2-364, gnl|rn3|chrX (26729044-26729496)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-364, gnl|bosTau2|chrX (26183688-26184049)
               

               
               2-364, gnl|canFam2|chrX (42043760-42044166)
               

               
               2-364, gnl|dasNov1|scaffold_23272 (16037-16439)
               

               
               2-364, gnl|echTel1|scaffold_323080 (98597-98244)
               

               
               2-364, gnl|hg17|chrX (48555034-48555426)
               

               
               2-364, gnl|Hg17|chrX (48555541-48555186)
               

               
               2-364, gnl|loxAfr1|scaffold_61071 (5740-6128)
               

               
               2-364, gnl|mm7|chrX (6293087-6292646)
               

               
               2-364, gnl|Mm7|chrX (6292531-6292885)
               

               
               2-364, gnl|oryCun1|scaffold_190599 (56522-56167)
               

               
               2-364, gnl|panTro1|chrX (49890372-49890774)
               

               
               2-364, gnl|rheMac2|chrX (46798970-46799386)
               

               
               2-364, gnl|rn3|chrX (26729044-26729496)

	2-364, gnl\|bosTau2\|chrX (26183688-26184049)
	2-364, gnl\|canFam2\|chrX (42043760-42044166)
	2-364, gnl\|dasNov1\|scaffold_23272 (16037-16439)
	2-364, gnl\|echTel1\|scaffold_323080 (98597-98244)
	2-364, gnl\|hg17\|chrX (48555034-48555426)
	2-364, gnl\|Hg17\|chrX (48555541-48555186)
	2-364, gnl\|loxAfr1\|scaffold_61071 (5740-6128)
	2-364, gnl\|mm7\|chrX (6293087-6292646)
	2-364, gnl\|Mm7\|chrX (6292531-6292885)
	2-364, gnl\|oryCun1\|scaffold_190599 (56522-56167)
	2-364, gnl\|panTro1\|chrX (49890372-49890774)
	2-364, gnl\|rheMac2\|chrX (46798970-46799386)
	2-364, gnl\|rn3\|chrX (26729044-26729496)