Non-Coding RNA Search

Pig2-121P11

Sequence:


               
               CCTTCCATGTCAGGGTACTTGGGGCAGCAATTGAGCTGAACCTGAGGTCCCCTTGCTAGG
GGGCAGGTGAGCTCTCTTTGTGACTTGCTCCTAGGTTGGTGCCTCCATCAATAAATGATT
TTCTACTCCCCAGGAGGTTGGCCCTCTATCCATAGCTGTGGCTATCACCATCTCAGGCTC
TGTCCCTTGCTTCACTCTGGGAGAGATGGCAGTGTTCACCTCTGGGACCTGATCCATCTT
TGTCTCAGTCCAGGAGGCCCCACATGTGCCTCCTGGAAGGTGGCCCAGCAGTCTCATTTG
GTCCCCTTCTAGTCTCCTCTCCCATCCTGTCCCAGTCACTAGCAGAAATGCTAACATTCC
TGCCCAGTAGCCAGAGTAGCGTGCTAAAATTCCCTTGTAGATAGGGGCTCCGGCTGCTGT
AGAAACTAATAAAGGTGTGGTTGGCTCTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCCATGTCAGGGTACTTGGGGCAGCAATTGAGCTGAACCTGAGGTCCCCTTGCTAGG
GGGCAGGTGAGCTCTCTTTGTGACTTGCTCCTAGGTTGGTGCCTCCATCAATAAATGATT
TTCTACTCCCCAGGAGGTTGGCCCTCTATCCATAGCTGTGGCTATCACCATCTCAGGCTC
TGTCCCTTGCTTCACTCTGGGAGAGATGGCAGTGTTCACCTCTGGGACCTGATCCATCTT
TGTCTCAGTCCAGGAGGCCCCACATGTGCCTCCTGGAAGGTGGCCCAGCAGTCTCATTTG
GTCCCCTTCTAGTCTCCTCTCCCATCCTGTCCCAGTCACTAGCAGAAATGCTAACATTCC
TGCCCAGTAGCCAGAGTAGCGTGCTAAAATTCCCTTGTAGATAGGGGCTCCGGCTGCTGT
AGAAACTAATAAAGGTGTGGTTGGCTCTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-449, - strand, RNAz p=0.998252

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-449, - strand, RNAz p=0.998252

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               218-448, 4114587 BARC 9BOV Bos taurus cDNA clone 9BOV44_P02 3', mRNA 
(gb|CK981995.1|), blast E-value=0, identity=100% 
               

               
               218-449, 1182276 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN282230.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, 1371909 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535852.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, 1373445 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537280.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, LB02715.CR_J16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV889982.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, LB02531.CR.1_M06 GC_BGC-25 Bos taurus cDNA clone IMAGE 
(gb|EE339935.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               218-448, 4114587 BARC 9BOV Bos taurus cDNA clone 9BOV44_P02 3', mRNA 
(gb|CK981995.1|), blast E-value=0, identity=100% 
               

               
               218-449, 1182276 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN282230.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, 1371909 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535852.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, 1373445 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537280.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, LB02715.CR_J16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV889982.1|), 
blast E-value=0, identity=100% 
               

               
               218-449, LB02531.CR.1_M06 GC_BGC-25 Bos taurus cDNA clone IMAGE 
(gb|EE339935.1|), blast E-value=0, identity=100%

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-449, gnl|bosTau2|chr15 (41953323-41953771)
               

               
               1-449, gnl|canFam2|chr21 (27595890-27595034)
               

               
               1-449, gnl|dasNov1|scaffold_25154 (645-1583)
               

               
               1-449, gnl|hg17|chr11 (73050506-73051424)
               

               
               1-449, gnl|Hg17|chr11 (73051063-73051505)
               

               
               1-449, gnl|loxAfr1|scaffold_2686 (98474-97623)
               

               
               1-449, gnl|mm7|chr7 (96690972-96690227)
               

               
               1-449, gnl|Mm7|chr7 (96690565-96690145)
               

               
               1-449, gnl|oryCun1|scaffold_191847 (3495-4364)
               

               
               1-449, gnl|panTro1|chr9 (74331213-74332129)
               

               
               1-449, gnl|rheMac2|chr14 (71802364-71803251)
               

               
               1-449, gnl|rn3|chr1 (158161750-158160999)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-449, gnl|bosTau2|chr15 (41953323-41953771)
               

               
               1-449, gnl|canFam2|chr21 (27595890-27595034)
               

               
               1-449, gnl|dasNov1|scaffold_25154 (645-1583)
               

               
               1-449, gnl|hg17|chr11 (73050506-73051424)
               

               
               1-449, gnl|Hg17|chr11 (73051063-73051505)
               

               
               1-449, gnl|loxAfr1|scaffold_2686 (98474-97623)
               

               
               1-449, gnl|mm7|chr7 (96690972-96690227)
               

               
               1-449, gnl|Mm7|chr7 (96690565-96690145)
               

               
               1-449, gnl|oryCun1|scaffold_191847 (3495-4364)
               

               
               1-449, gnl|panTro1|chr9 (74331213-74332129)
               

               
               1-449, gnl|rheMac2|chr14 (71802364-71803251)
               

               
               1-449, gnl|rn3|chr1 (158161750-158160999)

	218-448, 4114587 BARC 9BOV Bos taurus cDNA clone 9BOV44_P02 3', mRNA (gb\|CK981995.1\|), blast E-value=0, identity=100%
	218-449, 1182276 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN282230.1\|), blast E-value=0, identity=100%
	218-449, 1371909 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN535852.1\|), blast E-value=0, identity=100%
	218-449, 1373445 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN537280.1\|), blast E-value=0, identity=100%
	218-449, LB02715.CR_J16 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV889982.1\|), blast E-value=0, identity=100%
	218-449, LB02531.CR.1_M06 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE339935.1\|), blast E-value=0, identity=100%

	1-449, gnl\|bosTau2\|chr15 (41953323-41953771)
	1-449, gnl\|canFam2\|chr21 (27595890-27595034)
	1-449, gnl\|dasNov1\|scaffold_25154 (645-1583)
	1-449, gnl\|hg17\|chr11 (73050506-73051424)
	1-449, gnl\|Hg17\|chr11 (73051063-73051505)
	1-449, gnl\|loxAfr1\|scaffold_2686 (98474-97623)
	1-449, gnl\|mm7\|chr7 (96690972-96690227)
	1-449, gnl\|Mm7\|chr7 (96690565-96690145)
	1-449, gnl\|oryCun1\|scaffold_191847 (3495-4364)
	1-449, gnl\|panTro1\|chr9 (74331213-74332129)
	1-449, gnl\|rheMac2\|chr14 (71802364-71803251)
	1-449, gnl\|rn3\|chr1 (158161750-158160999)