Non-Coding RNA Search

Pig2-123P02

Sequence:


               
               ATTTAAATTCTCTATGTATAATCATATCAAATATTTAAAAAGTAAAAGGGTCAAAGATGA
TTATTAACTATCTCACCAGAATCCTATATACCTTTATATATATTTAAAAAGTATTGAGCT
GTTTTGAATATGACTATGCTGGCCTGTCTGCCTTTTAGCCTGATTCCTTCACTCTAGTGT
TATGAAAGTCTGATGGAAACTTTTTCAATAAGCTAAGTAATGTTGTACCTTGCAAAAAAA
GCCTCCACTCTGACAAACAGGGCCTTATAGAGTGGGGATGTTTTCATACTGGGAGTACGG
AGATTTTGCAGATGTGTGCATCTGTTCCATTTAAGGTGCCCTTAAATGTGTTGAATGTAA
TGTGTTAAATGTTTATGTGTAATCTATAAAATATTTATGTATGTGCATAAGACTGTCACA
AGATGTATTCTCAGGAATACTGTTACCTGGAGTTTGAAGGAATAATTATTTTTAAAAAAA
GTTGNGGAAGATTAGACAAAGTTCAAGATAAATAACGATTTTTTTGTAATTCAAAAAAAA
TCATTGAGCATATGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAAATTCTCTATGTATAATCATATCAAATATTTAAAAAGTAAAAGGGTCAAAGATGA
TTATTAACTATCTCACCAGAATCCTATATACCTTTATATATATTTAAAAAGTATTGAGCT
GTTTTGAATATGACTATGCTGGCCTGTCTGCCTTTTAGCCTGATTCCTTCACTCTAGTGT
TATGAAAGTCTGATGGAAACTTTTTCAATAAGCTAAGTAATGTTGTACCTTGCAAAAAAA
GCCTCCACTCTGACAAACAGGGCCTTATAGAGTGGGGATGTTTTCATACTGGGAGTACGG
AGATTTTGCAGATGTGTGCATCTGTTCCATTTAAGGTGCCCTTAAATGTGTTGAATGTAA
TGTGTTAAATGTTTATGTGTAATCTATAAAATATTTATGTATGTGCATAAGACTGTCACA
AGATGTATTCTCAGGAATACTGTTACCTGGAGTTTGAAGGAATAATTATTTTTAAAAAAA
GTTGNGGAAGATTAGACAAAGTTCAAGATAAATAACGATTTTTTTGTAATTCAAAAAAAA
TCATTGAGCATATGACTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               240-394, - strand, RNAz p=0.987395
               

               
               298-409, - strand, RNAz p=0.996804

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-394, - strand, RNAz p=0.987395
               

               
               298-409, - strand, RNAz p=0.996804

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-558, gnl|bosTau2|chr2 (55609179-55608630)
               

               
               5-558, gnl|canFam2|chr37 (20862630-20863146)
               

               
               5-558, gnl|dasNov1|scaffold_97392 (5561-5040)
               

               
               5-558, gnl|echTel1|scaffold_286182 (25810-26337)
               

               
               5-558, gnl|hg17|chr2 (210687558-210688059)
               

               
               5-558, gnl|Hg17|chr2 (210687716-210688251)
               

               
               5-558, gnl|loxAfr1|scaffold_939 (118126-117601)
               

               
               5-558, gnl|mm7|chr1 (66936980-66937470)
               

               
               5-558, gnl|Mm7|chr1 (66937142-66937644)
               

               
               5-558, gnl|monDom2|scaffold_39 (12823107-12822562)
               

               
               5-558, gnl|oryCun1|scaffold_190211 (30253-29769)
               

               
               5-558, gnl|panTro1|chr13 (100776462-100776963)
               

               
               5-558, gnl|rheMac2|chr12 (73780120-73780625)
               

               
               5-558, gnl|rn3|chr9 (65613987-65614478)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-558, gnl|bosTau2|chr2 (55609179-55608630)
               

               
               5-558, gnl|canFam2|chr37 (20862630-20863146)
               

               
               5-558, gnl|dasNov1|scaffold_97392 (5561-5040)
               

               
               5-558, gnl|echTel1|scaffold_286182 (25810-26337)
               

               
               5-558, gnl|hg17|chr2 (210687558-210688059)
               

               
               5-558, gnl|Hg17|chr2 (210687716-210688251)
               

               
               5-558, gnl|loxAfr1|scaffold_939 (118126-117601)
               

               
               5-558, gnl|mm7|chr1 (66936980-66937470)
               

               
               5-558, gnl|Mm7|chr1 (66937142-66937644)
               

               
               5-558, gnl|monDom2|scaffold_39 (12823107-12822562)
               

               
               5-558, gnl|oryCun1|scaffold_190211 (30253-29769)
               

               
               5-558, gnl|panTro1|chr13 (100776462-100776963)
               

               
               5-558, gnl|rheMac2|chr12 (73780120-73780625)
               

               
               5-558, gnl|rn3|chr9 (65613987-65614478)

	240-394, - strand, RNAz p=0.987395
	298-409, - strand, RNAz p=0.996804

	5-558, gnl\|bosTau2\|chr2 (55609179-55608630)
	5-558, gnl\|canFam2\|chr37 (20862630-20863146)
	5-558, gnl\|dasNov1\|scaffold_97392 (5561-5040)
	5-558, gnl\|echTel1\|scaffold_286182 (25810-26337)
	5-558, gnl\|hg17\|chr2 (210687558-210688059)
	5-558, gnl\|Hg17\|chr2 (210687716-210688251)
	5-558, gnl\|loxAfr1\|scaffold_939 (118126-117601)
	5-558, gnl\|mm7\|chr1 (66936980-66937470)
	5-558, gnl\|Mm7\|chr1 (66937142-66937644)
	5-558, gnl\|monDom2\|scaffold_39 (12823107-12822562)
	5-558, gnl\|oryCun1\|scaffold_190211 (30253-29769)
	5-558, gnl\|panTro1\|chr13 (100776462-100776963)
	5-558, gnl\|rheMac2\|chr12 (73780120-73780625)
	5-558, gnl\|rn3\|chr9 (65613987-65614478)