Non-Coding RNA Search

Pig2-124G24

Sequence:


               
               ACGGAAGCCTGCATCACTGCCTACTGCAAAGAGGCTCCCTCAATCATAATTTAGGATGGG
GCCCTATTCTGGTGTCCCTTCAAGTTCCTGAGCTCACCATCGAAGAGTTTCTACAGGAGT
GCCTGTCGCTTGGCAGCTACTTGACCCTCTATGTCTACTTGCTTCAGTGTCTAAATAGTG
AGCACACGCTGACGAATGAGATGAAAGTGCTACTCATCTTGAGCAAGTGGTTGGAACATG
TGTATCCAATCTCTATGCAGGAGGAAGCAAAGCTGTTTTTGTGGTGGCACCAAGTACTGC
AACTGTCCCTGGTTCAGACAGATCATAATGACTCGATCTTGACAGAGTCTGTCATTCTAA
TTCTGCTGATGCTCCAGGGCCGACAGAGCCTGCTTGCCGATGAGAGGCTCACCTCACGGA
TTCTCGGAGCAATCGGTCTGGGCCGGAATTCGCCCTTGTACAACAGGTTCCGAGTGGTTG
CCCGAGGCATGGCTGCCTTCCTTTCAATTCACGTTCCTACTGAGGATCAGATGCGTCTGA
AGCCTGGCTCTGAATTACATCTGACCCTCACAGCTCAGAATATGAAAGAAAGAAAAATTG
ATATTGTGGAACCCACGAATGCCTTTCTTTCTTTATTCCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGAAGCCTGCATCACTGCCTACTGCAAAGAGGCTCCCTCAATCATAATTTAGGATGGG
GCCCTATTCTGGTGTCCCTTCAAGTTCCTGAGCTCACCATCGAAGAGTTTCTACAGGAGT
GCCTGTCGCTTGGCAGCTACTTGACCCTCTATGTCTACTTGCTTCAGTGTCTAAATAGTG
AGCACACGCTGACGAATGAGATGAAAGTGCTACTCATCTTGAGCAAGTGGTTGGAACATG
TGTATCCAATCTCTATGCAGGAGGAAGCAAAGCTGTTTTTGTGGTGGCACCAAGTACTGC
AACTGTCCCTGGTTCAGACAGATCATAATGACTCGATCTTGACAGAGTCTGTCATTCTAA
TTCTGCTGATGCTCCAGGGCCGACAGAGCCTGCTTGCCGATGAGAGGCTCACCTCACGGA
TTCTCGGAGCAATCGGTCTGGGCCGGAATTCGCCCTTGTACAACAGGTTCCGAGTGGTTG
CCCGAGGCATGGCTGCCTTCCTTTCAATTCACGTTCCTACTGAGGATCAGATGCGTCTGA
AGCCTGGCTCTGAATTACATCTGACCCTCACAGCTCAGAATATGAAAGAAAGAAAAATTG
ATATTGTGGAACCCACGAATGCCTTTCTTTCTTTATTCCTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61848716|ref|XP_607632.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61848716|ref|XP_607632.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               251-409, + strand, RNAz p=0.910916

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-409, + strand, RNAz p=0.910916

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               32-247, gnl|bosTau2|chr24 (36773605-36773390)
               

               
               32-247, gnl|canFam2|chr7 (48285826-48285658)
               

               
               32-247, gnl|danRer3|chr5 (49415782-49415625)
               

               
               32-247, gnl|dasNov1|scaffold_182 (57592-57760)
               

               
               32-247, gnl|echTel1|scaffold_317802 (8943-9111)
               

               
               32-247, gnl|fr1|chrUn (197858910-197858754)
               

               
               32-247, gnl|galGal2|chr14 (1027166-1027332)
               

               
               32-247, gnl|hg17|chr18 (41692516-41692684)
               

               
               32-247, gnl|Hg17|chr18 (41692747-41692532)
               

               
               32-247, gnl|loxAfr1|scaffold_18633 (21152-20984)
               

               
               32-247, gnl|mm7|chr18 (78314464-78314296)
               

               
               32-247, gnl|Mm7|chr18 (78314231-78314446)
               

               
               32-247, gnl|monDom2|scaffold_58 (4085328-4085492)
               

               
               32-247, gnl|panTro1|chr17 (38021739-38021907)
               

               
               32-247, gnl|rheMac2|chr18 (38889457-38889625)
               

               
               32-247, gnl|rn3|chr18 (75010439-75010271)
               

               
               32-247, gnl|tetNig1|chr12 (3111742-3111577)
               

               
               32-247, gnl|xenTro1|scaffold_175 (538219-538055)
               


               
               251-468, gnl|bosTau2|chr24 (36772897-36772680)
               

               
               251-468, gnl|Hg17|chr18 (41692031-41691814)
               

               
               251-468, gnl|Mm7|chr18 (78315439-78315656)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-247, gnl|bosTau2|chr24 (36773605-36773390)
               

               
               32-247, gnl|canFam2|chr7 (48285826-48285658)
               

               
               32-247, gnl|danRer3|chr5 (49415782-49415625)
               

               
               32-247, gnl|dasNov1|scaffold_182 (57592-57760)
               

               
               32-247, gnl|echTel1|scaffold_317802 (8943-9111)
               

               
               32-247, gnl|fr1|chrUn (197858910-197858754)
               

               
               32-247, gnl|galGal2|chr14 (1027166-1027332)
               

               
               32-247, gnl|hg17|chr18 (41692516-41692684)
               

               
               32-247, gnl|Hg17|chr18 (41692747-41692532)
               

               
               32-247, gnl|loxAfr1|scaffold_18633 (21152-20984)
               

               
               32-247, gnl|mm7|chr18 (78314464-78314296)
               

               
               32-247, gnl|Mm7|chr18 (78314231-78314446)
               

               
               32-247, gnl|monDom2|scaffold_58 (4085328-4085492)
               

               
               32-247, gnl|panTro1|chr17 (38021739-38021907)
               

               
               32-247, gnl|rheMac2|chr18 (38889457-38889625)
               

               
               32-247, gnl|rn3|chr18 (75010439-75010271)
               

               
               32-247, gnl|tetNig1|chr12 (3111742-3111577)
               

               
               32-247, gnl|xenTro1|scaffold_175 (538219-538055)
               


               
               251-468, gnl|bosTau2|chr24 (36772897-36772680)
               

               
               251-468, gnl|Hg17|chr18 (41692031-41691814)
               

               
               251-468, gnl|Mm7|chr18 (78315439-78315656)

	32-247, gnl\|bosTau2\|chr24 (36773605-36773390)
	32-247, gnl\|canFam2\|chr7 (48285826-48285658)
	32-247, gnl\|danRer3\|chr5 (49415782-49415625)
	32-247, gnl\|dasNov1\|scaffold_182 (57592-57760)
	32-247, gnl\|echTel1\|scaffold_317802 (8943-9111)
	32-247, gnl\|fr1\|chrUn (197858910-197858754)
	32-247, gnl\|galGal2\|chr14 (1027166-1027332)
	32-247, gnl\|hg17\|chr18 (41692516-41692684)
	32-247, gnl\|Hg17\|chr18 (41692747-41692532)
	32-247, gnl\|loxAfr1\|scaffold_18633 (21152-20984)
	32-247, gnl\|mm7\|chr18 (78314464-78314296)
	32-247, gnl\|Mm7\|chr18 (78314231-78314446)
	32-247, gnl\|monDom2\|scaffold_58 (4085328-4085492)
	32-247, gnl\|panTro1\|chr17 (38021739-38021907)
	32-247, gnl\|rheMac2\|chr18 (38889457-38889625)
	32-247, gnl\|rn3\|chr18 (75010439-75010271)
	32-247, gnl\|tetNig1\|chr12 (3111742-3111577)
	32-247, gnl\|xenTro1\|scaffold_175 (538219-538055)

	251-468, gnl\|bosTau2\|chr24 (36772897-36772680)
	251-468, gnl\|Hg17\|chr18 (41692031-41691814)
	251-468, gnl\|Mm7\|chr18 (78315439-78315656)