Non-Coding RNA Search

Pig2-124O15

Sequence:


               
               CTGCTGCCCCACGGCATGGAGGGCATGGGCCCGGTACACTCGTCGGCGAGGCCTGAGAGG
TTCCTGCAGATGAGCAATGATGACTCGGATGCCTACCCCGCATTCACCCAAGACTTCGAG
GGGAGGCAGCTCTATGACTGCAACTGGATTGTGGGCAACTGCTCCACGCCGGCCAACTAC
TTCCACGTGCTGCGCCGGCAGATCCTGCTGCCCTTCCGCAAGCCGCTGATCATCTTCACA
CCTAAATCTCTGCTGAGGCACCCAGAGGCCAAGTCCAGCTTTGACCAAATGGTATCATGG
ACCAACTTTCAGCGGGTGATTCCTGAGGATGGGGCTGCGGTACGGGCTCCTGATCATGTG
CAACGGCTCATCTTCTGCACGGGAAAGGTGTACTACGACCTGCTGAAAGAGCGGAGCAAC
CATGGCCTGGATGAGCAGGTGGCCATCACACGCCTTGAGCAGATCTCTCCATTCCCCTTT
GACCTGATCAAGCAAGAGGCAGAGAAGTACCCATGCGCTGAGCTGGTGTGGTGCCATGAG
GAGCATAAGAACATGGGCTACTACGACTACATCAGCCCACGCTTCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGCCCCACGGCATGGAGGGCATGGGCCCGGTACACTCGTCGGCGAGGCCTGAGAGG
TTCCTGCAGATGAGCAATGATGACTCGGATGCCTACCCCGCATTCACCCAAGACTTCGAG
GGGAGGCAGCTCTATGACTGCAACTGGATTGTGGGCAACTGCTCCACGCCGGCCAACTAC
TTCCACGTGCTGCGCCGGCAGATCCTGCTGCCCTTCCGCAAGCCGCTGATCATCTTCACA
CCTAAATCTCTGCTGAGGCACCCAGAGGCCAAGTCCAGCTTTGACCAAATGGTATCATGG
ACCAACTTTCAGCGGGTGATTCCTGAGGATGGGGCTGCGGTACGGGCTCCTGATCATGTG
CAACGGCTCATCTTCTGCACGGGAAAGGTGTACTACGACCTGCTGAAAGAGCGGAGCAAC
CATGGCCTGGATGAGCAGGTGGCCATCACACGCCTTGAGCAGATCTCTCCATTCCCCTTT
GACCTGATCAAGCAAGAGGCAGAGAAGTACCCATGCGCTGAGCTGGTGTGGTGCCATGAG
GAGCATAAGAACATGGGCTACTACGACTACATCAGCCCACGCTTCATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55633813|ref|XP_507783.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55633813|ref|XP_507783.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-229, - strand, RNAz p=0.601309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-229, - strand, RNAz p=0.601309

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               58-586, gnl|bosTau2|chr28 (34049899-34049371)
               


               
               100-229, gnl|bosTau2|chr28 (34051436-34051307)
               

               
               100-229, gnl|Hg17|chr10 (50616124-50615995)
               

               
               100-229, gnl|Mm7|chr14 (29774423-29774552)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-586, gnl|bosTau2|chr28 (34049899-34049371)
               


               
               100-229, gnl|bosTau2|chr28 (34051436-34051307)
               

               
               100-229, gnl|Hg17|chr10 (50616124-50615995)
               

               
               100-229, gnl|Mm7|chr14 (29774423-29774552)

	58-586, gnl\|bosTau2\|chr28 (34049899-34049371)

	100-229, gnl\|bosTau2\|chr28 (34051436-34051307)
	100-229, gnl\|Hg17\|chr10 (50616124-50615995)
	100-229, gnl\|Mm7\|chr14 (29774423-29774552)