Non-Coding RNA Search

Pig2-126D15

Sequence:


               
               GGAGGCCTGATCCCCCCAGCACCCCAGGCCAGCCCCCCAATAGGCAGGGAGCCCAGCCCC
TCCCTGGATGCTGAAGGCCTTACCCAGGAGACGGAAGACCTGTCTCAGTCTTCACCTGGT
CCACAGCGGCCTCAGGAACAGGCGACCACACGGAAGTTCTCCTTGGGATACCGTGGGGGC
TATGCAGGGGTGGCGGGCTACGGCACCTTTGCCTTTGGTGGGGATGCTGGCGGCATGCTG
GGGCAGGGACCTCTGTGGGCCAAGATGGCCTGGGCCACCTCTCAGTCCTCAGAGGAGCAG
GAGGACCAAGGGGCCCAGAGCCCACCACCCCAGGCCAGCACAGTGCCCCTACCTGAGGGT
GGCAAGGCCCCTCTGAGGGGCTCCCAGGAATTGAGCTCATGGGAGGACTTAAGTGGAGGC
TCCCAGGTGTCGCTTGTACAGATCCGGGACCTGTCCATGGACCCGGAAGCAGCTGACACT
GTATCCCTGGATATCTCAGAGGTGGATCCTGCCTACCTCAACCTGTCTGACCTGTATGAC
ATCAAATACCTGCCATTTGAATTCATGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCCTGATCCCCCCAGCACCCCAGGCCAGCCCCCCAATAGGCAGGGAGCCCAGCCCC
TCCCTGGATGCTGAAGGCCTTACCCAGGAGACGGAAGACCTGTCTCAGTCTTCACCTGGT
CCACAGCGGCCTCAGGAACAGGCGACCACACGGAAGTTCTCCTTGGGATACCGTGGGGGC
TATGCAGGGGTGGCGGGCTACGGCACCTTTGCCTTTGGTGGGGATGCTGGCGGCATGCTG
GGGCAGGGACCTCTGTGGGCCAAGATGGCCTGGGCCACCTCTCAGTCCTCAGAGGAGCAG
GAGGACCAAGGGGCCCAGAGCCCACCACCCCAGGCCAGCACAGTGCCCCTACCTGAGGGT
GGCAAGGCCCCTCTGAGGGGCTCCCAGGAATTGAGCTCATGGGAGGACTTAAGTGGAGGC
TCCCAGGTGTCGCTTGTACAGATCCGGGACCTGTCCATGGACCCGGAAGCAGCTGACACT
GTATCCCTGGATATCTCAGAGGTGGATCCTGCCTACCTCAACCTGTCTGACCTGTATGAC
ATCAAATACCTGCCATTTGAATTCATGATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-107, - strand, RNAz p=0.615183
               

               
               148-548, + strand, RNAz p=0.999294

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-107, - strand, RNAz p=0.615183
               

               
               148-548, + strand, RNAz p=0.999294

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               337-475, - strand, RNAmicro p=0.990983
               

               
               37-165, - strand, RNAmicro p=0.986167

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               337-475, - strand, RNAmicro p=0.990983
               

               
               37-165, - strand, RNAmicro p=0.986167

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-570, gnl|bosTau2|chr7 (880905-881475)
               

               
               2-570, gnl|Hg17|chr1 (224866535-224867186)
               

               
               2-570, gnl|Mm7|chr11 (59081641-59081089)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-570, gnl|bosTau2|chr7 (880905-881475)
               

               
               2-570, gnl|Hg17|chr1 (224866535-224867186)
               

               
               2-570, gnl|Mm7|chr11 (59081641-59081089)

	2-107, - strand, RNAz p=0.615183
	148-548, + strand, RNAz p=0.999294

	337-475, - strand, RNAmicro p=0.990983
	37-165, - strand, RNAmicro p=0.986167

	2-570, gnl\|bosTau2\|chr7 (880905-881475)
	2-570, gnl\|Hg17\|chr1 (224866535-224867186)
	2-570, gnl\|Mm7\|chr11 (59081641-59081089)