Non-Coding RNA Search

Pig2-127F24

Sequence:


               
               GTTCTGTGGGACGTGGGACCCCATTAAGCCCTGTCATGTGCTCTCCTGCAGACCATGTGC
TGCAGCAGGCACCCCCAGGGAGGGCCAGGGGTTTGCACCCACATTCTAACCATGTCTTTC
TCCCCCAAGACATGCTGCTTATCACCAACAACCCCTACGATTATGCATTCATCTCCCAAG
GAGAGACCACTGTGGCCTCAATTGATGATGCTGAGGAGCTCATGGCCACTGACAATGCCT
TTGATGTGCTGGGCTTCACTTCAGAGGAGAAGAACTCCATGTACAAGCTGACGGGCGCCA
TCATGCACTTCGGAAACATGAAATTCAAACTGAAGCAGCGAGAAGAGCAGGCTGAGCCAG
ACGGCACTGAAGAGGCTGACAAGTCTGCCTACCTCATGGGGCTGAACTCAGCTGATCTGC
TCAAGGGGCTGTGCCACCCTCGGGTGAAGGTGGGCAACGAATACGTCACCAAGGGGCAGA
ATGTCCAGCANGTGATGTATGCCACTGGGGCCTTGGCCAAGGCCGTGTATGAGAAGATGT
TCAACTGGATGGTGACACGGATCAATACCACCCTGGAGACCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTGTGGGACGTGGGACCCCATTAAGCCCTGTCATGTGCTCTCCTGCAGACCATGTGC
TGCAGCAGGCACCCCCAGGGAGGGCCAGGGGTTTGCACCCACATTCTAACCATGTCTTTC
TCCCCCAAGACATGCTGCTTATCACCAACAACCCCTACGATTATGCATTCATCTCCCAAG
GAGAGACCACTGTGGCCTCAATTGATGATGCTGAGGAGCTCATGGCCACTGACAATGCCT
TTGATGTGCTGGGCTTCACTTCAGAGGAGAAGAACTCCATGTACAAGCTGACGGGCGCCA
TCATGCACTTCGGAAACATGAAATTCAAACTGAAGCAGCGAGAAGAGCAGGCTGAGCCAG
ACGGCACTGAAGAGGCTGACAAGTCTGCCTACCTCATGGGGCTGAACTCAGCTGATCTGC
TCAAGGGGCTGTGCCACCCTCGGGTGAAGGTGGGCAACGAATACGTCACCAAGGGGCAGA
ATGTCCAGCANGTGATGTATGCCACTGGGGCCTTGGCCAAGGCCGTGTATGAGAAGATGT
TCAACTGGATGGTGACACGGATCAATACCACCCTGGAGACCAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1944465|dbj|BAA19582.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1944465|dbj|BAA19582.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, + strand, RNAz p=0.990487
               

               
               371-489, + strand, RNAz p=0.971737

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.990487
               

               
               371-489, + strand, RNAz p=0.971737

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-232, gnl|bosTau2|chr10 (14752242-14752476)
               

               
               1-232, gnl|Hg17|chr14 (22969838-22969610)
               

               
               1-232, gnl|Mm7|chr14 (49856650-49856427)
               


               
               235-370, gnl|bosTau2|chr13 (46561659-46561524)
               

               
               235-370, gnl|Hg17|chr20 (33038614-33038749)
               

               
               235-370, gnl|Mm7|chr2 (155361246-155361381)
               


               
               371-585, gnl|bosTau2|chr10 (13724760-13724974)
               

               
               371-585, gnl|Hg17|chr14 (22940028-22939814)
               

               
               371-585, gnl|Mm7|chr14 (49827126-49826912)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-232, gnl|bosTau2|chr10 (14752242-14752476)
               

               
               1-232, gnl|Hg17|chr14 (22969838-22969610)
               

               
               1-232, gnl|Mm7|chr14 (49856650-49856427)
               


               
               235-370, gnl|bosTau2|chr13 (46561659-46561524)
               

               
               235-370, gnl|Hg17|chr20 (33038614-33038749)
               

               
               235-370, gnl|Mm7|chr2 (155361246-155361381)
               


               
               371-585, gnl|bosTau2|chr10 (13724760-13724974)
               

               
               371-585, gnl|Hg17|chr14 (22940028-22939814)
               

               
               371-585, gnl|Mm7|chr14 (49827126-49826912)

	1-118, + strand, RNAz p=0.990487
	371-489, + strand, RNAz p=0.971737

	1-232, gnl\|bosTau2\|chr10 (14752242-14752476)
	1-232, gnl\|Hg17\|chr14 (22969838-22969610)
	1-232, gnl\|Mm7\|chr14 (49856650-49856427)

	235-370, gnl\|bosTau2\|chr13 (46561659-46561524)
	235-370, gnl\|Hg17\|chr20 (33038614-33038749)
	235-370, gnl\|Mm7\|chr2 (155361246-155361381)

	371-585, gnl\|bosTau2\|chr10 (13724760-13724974)
	371-585, gnl\|Hg17\|chr14 (22940028-22939814)
	371-585, gnl\|Mm7\|chr14 (49827126-49826912)