Non-Coding RNA Search

Pig2-128E04

Sequence:


               
               AATCAATTTGCACAGTATGCAAATCATAACTTGATTTTTTTAAAAGGCCAAAAAAATTGT
AGTTACGTTTCAGTATACACAAGAGAACTCTAATTTTCTGTCAATAAACACAAATATTTG
TACTAACATGCAGATGATGTTAACACTGGCTCTCTATGGGCTTGGGAATTATTTGTGATT
TTTATTTTCCGCTTTATATATTCTCCACAATTTCTATAATAACCTCGGTTGTTACCTTTA
GAATCAGAAAAGTGGTTTTATTTTGTTTTTGGAGAGAAAACATGGTGGAAACAATTTTGG
AGGCAAGCTCCGTTTCCTAGAAGCTGTGTGACTTCGAGGGAGCAGAGCTATACCTCTGAG
CCCAGTCTTCTCATCTGTAAAATGGGATAACACCACTCACCTCGGAGGCTGTAACTGTGA
CTACATGAGATAACGGATGTAGAAGTACTTTGTCAACTGGAAGATGCAGCTCGACTAGTA
ATTACTGCCATCCTCTCATCTTTGAGAATTTCTTTCCTTTCTTCATCCAGTGGTTTTTCA
AGCATGATGTCATTATACATTCATGCCAATAAGAGCTTGAAGCTAGTGCATGACTTTTTT
TTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAATTTGCACAGTATGCAAATCATAACTTGATTTTTTTAAAAGGCCAAAAAAATTGT
AGTTACGTTTCAGTATACACAAGAGAACTCTAATTTTCTGTCAATAAACACAAATATTTG
TACTAACATGCAGATGATGTTAACACTGGCTCTCTATGGGCTTGGGAATTATTTGTGATT
TTTATTTTCCGCTTTATATATTCTCCACAATTTCTATAATAACCTCGGTTGTTACCTTTA
GAATCAGAAAAGTGGTTTTATTTTGTTTTTGGAGAGAAAACATGGTGGAAACAATTTTGG
AGGCAAGCTCCGTTTCCTAGAAGCTGTGTGACTTCGAGGGAGCAGAGCTATACCTCTGAG
CCCAGTCTTCTCATCTGTAAAATGGGATAACACCACTCACCTCGGAGGCTGTAACTGTGA
CTACATGAGATAACGGATGTAGAAGTACTTTGTCAACTGGAAGATGCAGCTCGACTAGTA
ATTACTGCCATCCTCTCATCTTTGAGAATTTCTTTCCTTTCTTCATCCAGTGGTTTTTCA
AGCATGATGTCATTATACATTCATGCCAATAAGAGCTTGAAGCTAGTGCATGACTTTTTT
TTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               265-382, - strand, RNAz p=0.944084
               

               
               465-605, - strand, RNAz p=0.971044

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-382, - strand, RNAz p=0.944084
               

               
               465-605, - strand, RNAz p=0.971044

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               70-605, gnl|bosTau2|chr14 (8514428-8514966)
               

               
               70-605, gnl|canFam2|chr13 (24384284-24384646)
               

               
               70-605, gnl|hg17|chr8 (124000911-124001316)
               

               
               70-605, gnl|Hg17|chr8 (124001427-124000909)
               

               
               70-605, gnl|oryCun1|scaffold_208135 (61881-62246)
               

               
               70-605, gnl|panTro1|chr7 (126714463-126714868)
               

               
               70-605, gnl|rheMac2|chr8 (125511415-125511820)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-605, gnl|bosTau2|chr14 (8514428-8514966)
               

               
               70-605, gnl|canFam2|chr13 (24384284-24384646)
               

               
               70-605, gnl|hg17|chr8 (124000911-124001316)
               

               
               70-605, gnl|Hg17|chr8 (124001427-124000909)
               

               
               70-605, gnl|oryCun1|scaffold_208135 (61881-62246)
               

               
               70-605, gnl|panTro1|chr7 (126714463-126714868)
               

               
               70-605, gnl|rheMac2|chr8 (125511415-125511820)

	265-382, - strand, RNAz p=0.944084
	465-605, - strand, RNAz p=0.971044

	70-605, gnl\|bosTau2\|chr14 (8514428-8514966)
	70-605, gnl\|canFam2\|chr13 (24384284-24384646)
	70-605, gnl\|hg17\|chr8 (124000911-124001316)
	70-605, gnl\|Hg17\|chr8 (124001427-124000909)
	70-605, gnl\|oryCun1\|scaffold_208135 (61881-62246)
	70-605, gnl\|panTro1\|chr7 (126714463-126714868)
	70-605, gnl\|rheMac2\|chr8 (125511415-125511820)