Non-Coding RNA Search

Pig2-128H08

Sequence:


               
               CTGAAAAAGACCTATTAGATGATTCAGATGATGATGATATTGAAATTCTAGAAGAGTGTA
TTATTTCTGCCATGCCAACAAAATCTTCACGCAAAGCAAAAAAGCCAGCCCAGACTGCTT
CAAAATTACCTCCACCTGTGGCAAGAAAACCAAGTCAACTGCCTGTGTACAAACTTCTGC
CCTCACAAAACAGGTTACAAGCACAAAAGCATGTTAGTTTTACACCAGGAGATGATGTGC
CACGTGTGTATTGTGTAGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTG
ATCTAACAATAGAATCCCCCCCAAATGAGTTGGCTGCTGGAGAAGGGGCCAGAGCAGGGG
CACAGTCAGGTGAATTTGAAAAACGAGACACCATTCCTACAGAAGGCAGAAGTACAGATG
AGGCTCAAAGAGGGAAATCCACATCTGTAGCTATACCTGAACTGGATGACAATAAAACAG
AAGAAGGTGATATCCTTGCAGAATGCATTAATTCTGCTATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAAAAGACCTATTAGATGATTCAGATGATGATGATATTGAAATTCTAGAAGAGTGTA
TTATTTCTGCCATGCCAACAAAATCTTCACGCAAAGCAAAAAAGCCAGCCCAGACTGCTT
CAAAATTACCTCCACCTGTGGCAAGAAAACCAAGTCAACTGCCTGTGTACAAACTTCTGC
CCTCACAAAACAGGTTACAAGCACAAAAGCATGTTAGTTTTACACCAGGAGATGATGTGC
CACGTGTGTATTGTGTAGAAGGGACACCTATAAACTTTTCCACAGCTACATCTCTAAGTG
ATCTAACAATAGAATCCCCCCCAAATGAGTTGGCTGCTGGAGAAGGGGCCAGAGCAGGGG
CACAGTCAGGTGAATTTGAAAAACGAGACACCATTCCTACAGAAGGCAGAAGTACAGATG
AGGCTCAAAGAGGGAAATCCACATCTGTAGCTATACCTGAACTGGATGACAATAAAACAG
AAGAAGGTGATATCCTTGCAGAATGCATTAATTCTGCTATGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5D1B1_SPEMA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5D1B1_SPEMA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-524, - strand, RNAz p=0.997634

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-524, - strand, RNAz p=0.997634

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               371-480, - strand, RNAmicro p=0.984273

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               371-480, - strand, RNAmicro p=0.984273

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               360-524, BP249804 Sugano cDNA library, hippocampus Homo sapiens cDNA clone 
(dbj|BP249804.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, DA331709 BRHIP3 Homo sapiens cDNA clone BRHIP3029578 5', mRNA 
(dbj|DA331709.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, DA756045 NT2RP8 Homo sapiens cDNA clone NT2RP8002642 5', mRNA 
(dbj|DA756045.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, DA803397 OCBBF3 Homo sapiens cDNA clone OCBBF3008185 5', mRNA 
(dbj|DA803397.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, 602575138F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE (gb|BG548363.1|), 
blast E-value=0, identity=93.33% 
               

               
               360-524, ij51b03.x1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BM511634.1|), blast E-value=0, identity=90.91%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               360-524, BP249804 Sugano cDNA library, hippocampus Homo sapiens cDNA clone 
(dbj|BP249804.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, DA331709 BRHIP3 Homo sapiens cDNA clone BRHIP3029578 5', mRNA 
(dbj|DA331709.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, DA756045 NT2RP8 Homo sapiens cDNA clone NT2RP8002642 5', mRNA 
(dbj|DA756045.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, DA803397 OCBBF3 Homo sapiens cDNA clone OCBBF3008185 5', mRNA 
(dbj|DA803397.1|), blast E-value=0, identity=93.33% 
               

               
               360-524, 602575138F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE (gb|BG548363.1|), 
blast E-value=0, identity=93.33% 
               

               
               360-524, ij51b03.x1 Human insulinoma Homo sapiens cDNA clone IMAGE 
(gb|BM511634.1|), blast E-value=0, identity=90.91%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-524, gnl|bosTau2|chr10 (9473847-9474370)
               

               
               1-524, gnl|Hg17|chr5 (112203866-112204389)
               

               
               1-524, gnl|Mm7|chr18 (34690187-34690710)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-524, gnl|bosTau2|chr10 (9473847-9474370)
               

               
               1-524, gnl|Hg17|chr5 (112203866-112204389)
               

               
               1-524, gnl|Mm7|chr18 (34690187-34690710)

	360-524, BP249804 Sugano cDNA library, hippocampus Homo sapiens cDNA clone (dbj\|BP249804.1\|), blast E-value=0, identity=93.33%
	360-524, DA331709 BRHIP3 Homo sapiens cDNA clone BRHIP3029578 5', mRNA (dbj\|DA331709.1\|), blast E-value=0, identity=93.33%
	360-524, DA756045 NT2RP8 Homo sapiens cDNA clone NT2RP8002642 5', mRNA (dbj\|DA756045.1\|), blast E-value=0, identity=93.33%
	360-524, DA803397 OCBBF3 Homo sapiens cDNA clone OCBBF3008185 5', mRNA (dbj\|DA803397.1\|), blast E-value=0, identity=93.33%
	360-524, 602575138F1 NIH_MGC_77 Homo sapiens cDNA clone IMAGE (gb\|BG548363.1\|), blast E-value=0, identity=93.33%
	360-524, ij51b03.x1 Human insulinoma Homo sapiens cDNA clone IMAGE (gb\|BM511634.1\|), blast E-value=0, identity=90.91%

	1-524, gnl\|bosTau2\|chr10 (9473847-9474370)
	1-524, gnl\|Hg17\|chr5 (112203866-112204389)
	1-524, gnl\|Mm7\|chr18 (34690187-34690710)