Non-Coding RNA Search

Pig2-128J20

Sequence:


               
               CTGCTCGTGGCCCTGGTGGGCGACAGCTTGCTTGAGCCTTCTGGCCCATGGGCACTGGCT
GTGCCCGCGGCTTCCTGGCCGCCTTCAAACGGCATGGGTGGTGAAAAGCTGGGACCAGGG
CACTCCTCCCCTGGAGCTGCTGGCCAAAAGAAAAATCTTTACCGGCTCTTACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTCGTGGCCCTGGTGGGCGACAGCTTGCTTGAGCCTTCTGGCCCATGGGCACTGGCT
GTGCCCGCGGCTTCCTGGCCGCCTTCAAACGGCATGGGTGGTGAAAAGCTGGGACCAGGG
CACTCCTCCCCTGGAGCTGCTGGCCAAAAGAAAAATCTTTACCGGCTCTTACCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               35-150, + strand, RNAz p=0.83802

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-150, + strand, RNAz p=0.83802

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               35-150, gnl|bosTau2|chr15 (26052430-26052313)
               

               
               35-150, gnl|canFam2|chr21 (38439465-38439616)
               

               
               35-150, gnl|danRer3|chrUn (49596029-49595878)
               

               
               35-150, gnl|dasNov1|scaffold_37780 (11111-10963)
               

               
               35-150, gnl|echTel1|scaffold_324643 (133674-133814)
               

               
               35-150, gnl|fr1|chrUn (36880963-36881089)
               

               
               35-150, gnl|galGal2|chr5 (5573404-5573273)
               

               
               35-150, gnl|hg17|chr11 (12199755-12199906)
               

               
               35-150, gnl|Hg17|chr11 (12199765-12199882)
               

               
               35-150, gnl|loxAfr1|scaffold_132934 (581-732)
               

               
               35-150, gnl|mm7|chr7 (108235721-108235872)
               

               
               35-150, gnl|Mm7|chr7 (108235731-108235848)
               

               
               35-150, gnl|monDom2|scaffold_10 (62745209-62745352)
               

               
               35-150, gnl|oryCun1|scaffold_149670 (2423-2574)
               

               
               35-150, gnl|panTro1|chr9 (12452996-12453147)
               

               
               35-150, gnl|rheMac2|chr14 (59696215-59696064)
               

               
               35-150, gnl|rn3|chr1 (170242919-170243070)
               

               
               35-150, gnl|tetNig1|chr5 (6142958-6143088)
               

               
               35-150, gnl|xenTro1|scaffold_621 (678280-678406)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-150, gnl|bosTau2|chr15 (26052430-26052313)
               

               
               35-150, gnl|canFam2|chr21 (38439465-38439616)
               

               
               35-150, gnl|danRer3|chrUn (49596029-49595878)
               

               
               35-150, gnl|dasNov1|scaffold_37780 (11111-10963)
               

               
               35-150, gnl|echTel1|scaffold_324643 (133674-133814)
               

               
               35-150, gnl|fr1|chrUn (36880963-36881089)
               

               
               35-150, gnl|galGal2|chr5 (5573404-5573273)
               

               
               35-150, gnl|hg17|chr11 (12199755-12199906)
               

               
               35-150, gnl|Hg17|chr11 (12199765-12199882)
               

               
               35-150, gnl|loxAfr1|scaffold_132934 (581-732)
               

               
               35-150, gnl|mm7|chr7 (108235721-108235872)
               

               
               35-150, gnl|Mm7|chr7 (108235731-108235848)
               

               
               35-150, gnl|monDom2|scaffold_10 (62745209-62745352)
               

               
               35-150, gnl|oryCun1|scaffold_149670 (2423-2574)
               

               
               35-150, gnl|panTro1|chr9 (12452996-12453147)
               

               
               35-150, gnl|rheMac2|chr14 (59696215-59696064)
               

               
               35-150, gnl|rn3|chr1 (170242919-170243070)
               

               
               35-150, gnl|tetNig1|chr5 (6142958-6143088)
               

               
               35-150, gnl|xenTro1|scaffold_621 (678280-678406)

	35-150, gnl\|bosTau2\|chr15 (26052430-26052313)
	35-150, gnl\|canFam2\|chr21 (38439465-38439616)
	35-150, gnl\|danRer3\|chrUn (49596029-49595878)
	35-150, gnl\|dasNov1\|scaffold_37780 (11111-10963)
	35-150, gnl\|echTel1\|scaffold_324643 (133674-133814)
	35-150, gnl\|fr1\|chrUn (36880963-36881089)
	35-150, gnl\|galGal2\|chr5 (5573404-5573273)
	35-150, gnl\|hg17\|chr11 (12199755-12199906)
	35-150, gnl\|Hg17\|chr11 (12199765-12199882)
	35-150, gnl\|loxAfr1\|scaffold_132934 (581-732)
	35-150, gnl\|mm7\|chr7 (108235721-108235872)
	35-150, gnl\|Mm7\|chr7 (108235731-108235848)
	35-150, gnl\|monDom2\|scaffold_10 (62745209-62745352)
	35-150, gnl\|oryCun1\|scaffold_149670 (2423-2574)
	35-150, gnl\|panTro1\|chr9 (12452996-12453147)
	35-150, gnl\|rheMac2\|chr14 (59696215-59696064)
	35-150, gnl\|rn3\|chr1 (170242919-170243070)
	35-150, gnl\|tetNig1\|chr5 (6142958-6143088)
	35-150, gnl\|xenTro1\|scaffold_621 (678280-678406)