Pig2-128P23
|
TCGTCCTCCTCCTCGTCGTCGTCCTCCTCCTCCTCGCTGTCTGTGCTGCCTCCGCTCCGC
ACGCCTGGCGGCTGTCCCAGACGGGCCCCCCTGGCCAGCTGGCTGCCCTGCCAGGCGCCA
TCCTCCCCATCAGACTCCCCAGAGCCCTGGCCCTCCTCCTCGTCCTCCTCCTCCTCGTCG
TCATCGAACTGCTGGATCCGGTCCTTGTAGCATATCTCGAGCAGGTTGGCGTTGGGGTTG
TCATCGTCGGCGTTGAGAGAGAAGGTGATGTTGGCCGTCTTGTCGAAAGGCGCGTTCACG
CTCTCCTCCTGCTCCCCAAACTCCTCGTCATTGAAGCCGAAGTGGTCAATGAAGGCTGAG
GTCATGCGCTGCATCTGGAAGTCCATGAAGGCCTGCTGCAGCACCGCCTCCTCCGGGAAG
TTGAACTCCTTGAGCCTATCATCCTCGTCATCGCTGGAGGAGTGCAGGTGGTGGGTGTTC
ACCAGATCCACCGTGTTCTTCTTGTTGGTCTCCGCCAGGGGTCCCGACACGAAGGCTTCC
CACTTCTCCTGCTGCTCCTCCGGCAGCTCCTTCAGCAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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TCGTCCTCCTCCTCGTCGTCGTCCTCCTCCTCCTCGCTGTCTGTGCTGCCTCCGCTCCGC
ACGCCTGGCGGCTGTCCCAGACGGGCCCCCCTGGCCAGCTGGCTGCCCTGCCAGGCGCCA
TCCTCCCCATCAGACTCCCCAGAGCCCTGGCCCTCCTCCTCGTCCTCCTCCTCCTCGTCG
TCATCGAACTGCTGGATCCGGTCCTTGTAGCATATCTCGAGCAGGTTGGCGTTGGGGTTG
TCATCGTCGGCGTTGAGAGAGAAGGTGATGTTGGCCGTCTTGTCGAAAGGCGCGTTCACG
CTCTCCTCCTGCTCCCCAAACTCCTCGTCATTGAAGCCGAAGTGGTCAATGAAGGCTGAG
GTCATGCGCTGCATCTGGAAGTCCATGAAGGCCTGCTGCAGCACCGCCTCCTCCGGGAAG
TTGAACTCCTTGAGCCTATCATCCTCGTCATCGCTGGAGGAGTGCAGGTGGTGGGTGTTC
ACCAGATCCACCGTGTTCTTCTTGTTGGTCTCCGCCAGGGGTCCCGACACGAAGGCTTCC
CACTTCTCCTGCTGCTCCTCCGGCAGCTCCTTCAGCAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
57-227, gnl|bosTau2|chr18 (52973186-52973022) |
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57-227, gnl|Hg17|chr19 (60439822-60439992) |
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57-227, gnl|Mm7|chr7 (4209328-4209492) |
| |
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295-396, gnl|bosTau2|chr18 (52972031-52971930) |
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295-396, gnl|canFam2|chr1 (105496294-105496171) |
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295-396, gnl|danRer3|chr7 (4019058-4019178) |
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295-396, gnl|dasNov1|scaffold_853 (49618-49731) |
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295-396, gnl|echTel1|scaffold_243677 (2220-2093) |
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295-396, gnl|fr1|chrUn (254929494-254929600) |
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295-396, gnl|hg17|chr19 (60442566-60442688) |
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295-396, gnl|Hg17|chr19 (60442585-60442686) |
|
295-396, gnl|loxAfr1|scaffold_67509 (7239-7125) |
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295-396, gnl|mm7|chr7 (4212858-4212981) |
|
295-396, gnl|Mm7|chr7 (4212877-4212981) |
|
295-396, gnl|oryCun1|scaffold_195282 (201-323) |
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295-396, gnl|panTro1|chr20 (57864310-57864432) |
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295-396, gnl|rheMac2|chr19 (61255748-61255870) |
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295-396, gnl|rn3|chr1 (68003464-68003342) |
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295-396, gnl|tetNig1|chrUn_random (17993669-17993563) |
|
295-396, gnl|xenTro1|scaffold_832 (513330-513224) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
57-227, gnl|bosTau2|chr18 (52973186-52973022) |
|
57-227, gnl|Hg17|chr19 (60439822-60439992) |
|
57-227, gnl|Mm7|chr7 (4209328-4209492) |
| |
|
295-396, gnl|bosTau2|chr18 (52972031-52971930) |
|
295-396, gnl|canFam2|chr1 (105496294-105496171) |
|
295-396, gnl|danRer3|chr7 (4019058-4019178) |
|
295-396, gnl|dasNov1|scaffold_853 (49618-49731) |
|
295-396, gnl|echTel1|scaffold_243677 (2220-2093) |
|
295-396, gnl|fr1|chrUn (254929494-254929600) |
|
295-396, gnl|hg17|chr19 (60442566-60442688) |
|
295-396, gnl|Hg17|chr19 (60442585-60442686) |
|
295-396, gnl|loxAfr1|scaffold_67509 (7239-7125) |
|
295-396, gnl|mm7|chr7 (4212858-4212981) |
|
295-396, gnl|Mm7|chr7 (4212877-4212981) |
|
295-396, gnl|oryCun1|scaffold_195282 (201-323) |
|
295-396, gnl|panTro1|chr20 (57864310-57864432) |
|
295-396, gnl|rheMac2|chr19 (61255748-61255870) |
|
295-396, gnl|rn3|chr1 (68003464-68003342) |
|
295-396, gnl|tetNig1|chrUn_random (17993669-17993563) |
|
295-396, gnl|xenTro1|scaffold_832 (513330-513224) |
