Non-Coding RNA Search

Pig2-130J22

Sequence:


               
               GAATTGAAATATACTCACCTGTCTGAGAATTGTCTCCTGAATCACGATGAACCTTGTGAA
TCTAAAGTTGTTCAGAAGTTTGGTAAAGCAAGAAAAAGATTTTAAATATGGTATTAGTTA
CATTTCCAGCCAAAAACCTGCAATAAAAACTGAAAAATTCAAAAAAGCAAGAAGCTGCAC
AGATAACATGAACAGATGAAAGATATACACCAGGTGACAATACTACAAATGCTGTTACAT
TCAGACACTTAGAGGATGGCTGAGCCTGCGAGCAGGAAAACTACCAAGGAACACACTCTC
TAAGCAAGACATCTAGCTCTCCAGCCAGGTGTTCTCATTCTGACAGTCTGCAGAAATGCA
GAAAGACCAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTAAATTTTGGACCAAACTTTTT
TGACCCCCTTTTTTTTTCAAAACGTTTTAACCTTTTCCCGGGAAATAAAAACCCCCCCAA
AT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTGAAATATACTCACCTGTCTGAGAATTGTCTCCTGAATCACGATGAACCTTGTGAA
TCTAAAGTTGTTCAGAAGTTTGGTAAAGCAAGAAAAAGATTTTAAATATGGTATTAGTTA
CATTTCCAGCCAAAAACCTGCAATAAAAACTGAAAAATTCAAAAAAGCAAGAAGCTGCAC
AGATAACATGAACAGATGAAAGATATACACCAGGTGACAATACTACAAATGCTGTTACAT
TCAGACACTTAGAGGATGGCTGAGCCTGCGAGCAGGAAAACTACCAAGGAACACACTCTC
TAAGCAAGACATCTAGCTCTCCAGCCAGGTGTTCTCATTCTGACAGTCTGCAGAAATGCA
GAAAGACCAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTAAATTTTGGACCAAACTTTTT
TGACCCCCTTTTTTTTTCAAAACGTTTTAACCTTTTCCCGGGAAATAAAAACCCCCCCAA
AT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-120, - strand, RNAz p=0.575711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.575711

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               2-127, gnl|bosTau2|chr10 (2441047-2440919)
               

               
               2-127, gnl|canFam2|chr3 (32209618-32209370)
               

               
               2-127, gnl|dasNov1|scaffold_15117 (55457-55702)
               

               
               2-127, gnl|echTel1|scaffold_26521 (1580-1358)
               

               
               2-127, gnl|galGal2|chr13_random (240756-241038)
               

               
               2-127, gnl|hg17|chr5 (76731674-76731922)
               

               
               2-127, gnl|Hg17|chr5 (76731888-76731764)
               

               
               2-127, gnl|loxAfr1|scaffold_9162 (4598-4339)
               

               
               2-127, gnl|mm7|chr13 (92116162-92115898)
               

               
               2-127, gnl|monDom2|scaffold_27 (39157728-39157497)
               

               
               2-127, gnl|oryCun1|scaffold_127709 (1064-831)
               

               
               2-127, gnl|panTro1|chr4_random (45077055-45076809)
               

               
               2-127, gnl|rheMac2|chr6 (73636936-73637184)
               

               
               2-127, gnl|rn3|chr2 (25304039-25303815)
               


               
               222-470, gnl|bosTau2|chr10 (2440863-2440616)
               

               
               222-470, gnl|Hg17|chr5 (76731668-76731426)
               

               
               222-470, gnl|Mm7|chr13 (92116168-92116383)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-127, gnl|bosTau2|chr10 (2441047-2440919)
               

               
               2-127, gnl|canFam2|chr3 (32209618-32209370)
               

               
               2-127, gnl|dasNov1|scaffold_15117 (55457-55702)
               

               
               2-127, gnl|echTel1|scaffold_26521 (1580-1358)
               

               
               2-127, gnl|galGal2|chr13_random (240756-241038)
               

               
               2-127, gnl|hg17|chr5 (76731674-76731922)
               

               
               2-127, gnl|Hg17|chr5 (76731888-76731764)
               

               
               2-127, gnl|loxAfr1|scaffold_9162 (4598-4339)
               

               
               2-127, gnl|mm7|chr13 (92116162-92115898)
               

               
               2-127, gnl|monDom2|scaffold_27 (39157728-39157497)
               

               
               2-127, gnl|oryCun1|scaffold_127709 (1064-831)
               

               
               2-127, gnl|panTro1|chr4_random (45077055-45076809)
               

               
               2-127, gnl|rheMac2|chr6 (73636936-73637184)
               

               
               2-127, gnl|rn3|chr2 (25304039-25303815)
               


               
               222-470, gnl|bosTau2|chr10 (2440863-2440616)
               

               
               222-470, gnl|Hg17|chr5 (76731668-76731426)
               

               
               222-470, gnl|Mm7|chr13 (92116168-92116383)

	2-127, gnl\|bosTau2\|chr10 (2441047-2440919)
	2-127, gnl\|canFam2\|chr3 (32209618-32209370)
	2-127, gnl\|dasNov1\|scaffold_15117 (55457-55702)
	2-127, gnl\|echTel1\|scaffold_26521 (1580-1358)
	2-127, gnl\|galGal2\|chr13_random (240756-241038)
	2-127, gnl\|hg17\|chr5 (76731674-76731922)
	2-127, gnl\|Hg17\|chr5 (76731888-76731764)
	2-127, gnl\|loxAfr1\|scaffold_9162 (4598-4339)
	2-127, gnl\|mm7\|chr13 (92116162-92115898)
	2-127, gnl\|monDom2\|scaffold_27 (39157728-39157497)
	2-127, gnl\|oryCun1\|scaffold_127709 (1064-831)
	2-127, gnl\|panTro1\|chr4_random (45077055-45076809)
	2-127, gnl\|rheMac2\|chr6 (73636936-73637184)
	2-127, gnl\|rn3\|chr2 (25304039-25303815)

	222-470, gnl\|bosTau2\|chr10 (2440863-2440616)
	222-470, gnl\|Hg17\|chr5 (76731668-76731426)
	222-470, gnl\|Mm7\|chr13 (92116168-92116383)