Non-Coding RNA Search

Pig2-131B11

Sequence:


               
               GCCATCCCCTGACTCGGCCTCGCTCTCTCGGCCGCCAGCTCTCTATGGTACTGGCGACGA
CATGTGGCGGCTCCCGGGACTCCTCGGTCGAGCTCTGCCACGTCTACTGGGACCTGGCTT
CCGTGGGGTGACCCCCAAGTCCACCAGCCCAGATGGGGCTCAGGCCACCTCCTCCAACCT
GCTGGTCCCTGTGCCCGGCTATGATAGGTCCGGCCGCCATGGCCCAGGCCCAGGCCCAAG
CAGGGGCCCGAGGTCCCATGGATGGAAGGATGCCTTCTGGTGGATGTCCGCTCGTGTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATCCCCTGACTCGGCCTCGCTCTCTCGGCCGCCAGCTCTCTATGGTACTGGCGACGA
CATGTGGCGGCTCCCGGGACTCCTCGGTCGAGCTCTGCCACGTCTACTGGGACCTGGCTT
CCGTGGGGTGACCCCCAAGTCCACCAGCCCAGATGGGGCTCAGGCCACCTCCTCCAACCT
GCTGGTCCCTGTGCCCGGCTATGATAGGTCCGGCCGCCATGGCCCAGGCCCAGGCCCAAG
CAGGGGCCCGAGGTCCCATGGATGGAAGGATGCCTTCTGGTGGATGTCCGCTCGTGTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               91-209, + strand, RNAz p=0.908433

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-209, + strand, RNAz p=0.908433

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               91-209, gnl|bosTau2|chr7 (35850110-35849992)
               

               
               91-209, gnl|canFam2|chr2 (39715441-39715731)
               

               
               91-209, gnl|hg17|chr5 (141284265-141284494)
               

               
               91-209, gnl|Hg17|chr5 (141284328-141284446)
               

               
               91-209, gnl|loxAfr1|scaffold_15451 (68846-69120)
               

               
               91-209, gnl|mm7|chr18 (38627138-38627451)
               

               
               91-209, gnl|Mm7|chr18 (38627285-38627403)
               

               
               91-209, gnl|panTro1|chr4 (147923286-147923515)
               

               
               91-209, gnl|rheMac2|chr6 (138334054-138334283)
               

               
               91-209, gnl|rn3|chr18 (31206043-31206342)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-209, gnl|bosTau2|chr7 (35850110-35849992)
               

               
               91-209, gnl|canFam2|chr2 (39715441-39715731)
               

               
               91-209, gnl|hg17|chr5 (141284265-141284494)
               

               
               91-209, gnl|Hg17|chr5 (141284328-141284446)
               

               
               91-209, gnl|loxAfr1|scaffold_15451 (68846-69120)
               

               
               91-209, gnl|mm7|chr18 (38627138-38627451)
               

               
               91-209, gnl|Mm7|chr18 (38627285-38627403)
               

               
               91-209, gnl|panTro1|chr4 (147923286-147923515)
               

               
               91-209, gnl|rheMac2|chr6 (138334054-138334283)
               

               
               91-209, gnl|rn3|chr18 (31206043-31206342)

	91-209, gnl\|bosTau2\|chr7 (35850110-35849992)
	91-209, gnl\|canFam2\|chr2 (39715441-39715731)
	91-209, gnl\|hg17\|chr5 (141284265-141284494)
	91-209, gnl\|Hg17\|chr5 (141284328-141284446)
	91-209, gnl\|loxAfr1\|scaffold_15451 (68846-69120)
	91-209, gnl\|mm7\|chr18 (38627138-38627451)
	91-209, gnl\|Mm7\|chr18 (38627285-38627403)
	91-209, gnl\|panTro1\|chr4 (147923286-147923515)
	91-209, gnl\|rheMac2\|chr6 (138334054-138334283)
	91-209, gnl\|rn3\|chr18 (31206043-31206342)