Non-Coding RNA Search

Pig2-131I01

Sequence:


               
               CTGATTGGCCGAGGCAGGTCCCACCTCCTGCCATCCTGAGGATGGGGGGCAGAGGGAAGG
GTCTCCGAATGGCAGGGAGCAGTACAGGCTGCTGGAGCCAGCCCAGGACCGCCCCCTCCT
GGCCCAGTCAGTGCCCCTGGGCCTAAGAAACTGTCTCCTGTGGGAGGTATTGGCCAAATC
CTTTCTCTGCTCCCAGCACCTAGGGAGGCTGCAGATGGCAGTATCTCTGGGGACAGCAGC
TGCGACTGAGTCCACGGGCTGACACTGAGCTGCTTAGGCCGAGGCGGTGCACTCAGCCCA
GAGCCCCCGGAACAGGCATCTGCAGGGCGTCAGCCTAGGCGCCGCGATGCCGCACTTCCT
GGACTGGTTCGTGCCTGTTTACCTGTTCATCTCTGTCCTCATCCTGGTGGGCTTCGGCGC
CTGCATCTACTACTTCGAACCCGGCTTGCAGGAGGCGCACAAGTGGCGCATGCAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATTGGCCGAGGCAGGTCCCACCTCCTGCCATCCTGAGGATGGGGGGCAGAGGGAAGG
GTCTCCGAATGGCAGGGAGCAGTACAGGCTGCTGGAGCCAGCCCAGGACCGCCCCCTCCT
GGCCCAGTCAGTGCCCCTGGGCCTAAGAAACTGTCTCCTGTGGGAGGTATTGGCCAAATC
CTTTCTCTGCTCCCAGCACCTAGGGAGGCTGCAGATGGCAGTATCTCTGGGGACAGCAGC
TGCGACTGAGTCCACGGGCTGACACTGAGCTGCTTAGGCCGAGGCGGTGCACTCAGCCCA
GAGCCCCCGGAACAGGCATCTGCAGGGCGTCAGCCTAGGCGCCGCGATGCCGCACTTCCT
GGACTGGTTCGTGCCTGTTTACCTGTTCATCTCTGTCCTCATCCTGGTGGGCTTCGGCGC
CTGCATCTACTACTTCGAACCCGGCTTGCAGGAGGCGCACAAGTGGCGCATGCAGCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               37-129, - strand, RNAz p=0.554918
               

               
               40-152, + strand, RNAz p=0.509442

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-129, - strand, RNAz p=0.554918
               

               
               40-152, + strand, RNAz p=0.509442

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               42-159, - strand, RNAmicro p=0.999886

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               42-159, - strand, RNAmicro p=0.999886

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC068568, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC068568, +

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-333, gnl|bosTau2|chr5 (70500181-70500510)
               

               
               1-333, gnl|canFam2|chr10 (26470896-26470371)
               

               
               1-333, gnl|echTel1|scaffold_103474 (802-273)
               

               
               1-333, gnl|hg17|chr22 (40672473-40672992)
               

               
               1-333, gnl|Hg17|chr22 (40672592-40672925)
               

               
               1-333, gnl|loxAfr1|scaffold_9361 (27701-28215)
               

               
               1-333, gnl|mm7|chr15 (82340338-82340840)
               

               
               1-333, gnl|Mm7|chr15 (82340448-82340780)
               

               
               1-333, gnl|monDom2|scaffold_555 (8583-8070)
               

               
               1-333, gnl|oryCun1|scaffold_181385 (31431-31930)
               

               
               1-333, gnl|panTro1|chr23 (40942184-40942703)
               

               
               1-333, gnl|rheMac2|chr10 (85913986-85914506)
               

               
               1-333, gnl|rn3|chr7 (120663376-120663874)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-333, gnl|bosTau2|chr5 (70500181-70500510)
               

               
               1-333, gnl|canFam2|chr10 (26470896-26470371)
               

               
               1-333, gnl|echTel1|scaffold_103474 (802-273)
               

               
               1-333, gnl|hg17|chr22 (40672473-40672992)
               

               
               1-333, gnl|Hg17|chr22 (40672592-40672925)
               

               
               1-333, gnl|loxAfr1|scaffold_9361 (27701-28215)
               

               
               1-333, gnl|mm7|chr15 (82340338-82340840)
               

               
               1-333, gnl|Mm7|chr15 (82340448-82340780)
               

               
               1-333, gnl|monDom2|scaffold_555 (8583-8070)
               

               
               1-333, gnl|oryCun1|scaffold_181385 (31431-31930)
               

               
               1-333, gnl|panTro1|chr23 (40942184-40942703)
               

               
               1-333, gnl|rheMac2|chr10 (85913986-85914506)
               

               
               1-333, gnl|rn3|chr7 (120663376-120663874)

	37-129, - strand, RNAz p=0.554918
	40-152, + strand, RNAz p=0.509442

	1-333, gnl\|bosTau2\|chr5 (70500181-70500510)
	1-333, gnl\|canFam2\|chr10 (26470896-26470371)
	1-333, gnl\|echTel1\|scaffold_103474 (802-273)
	1-333, gnl\|hg17\|chr22 (40672473-40672992)
	1-333, gnl\|Hg17\|chr22 (40672592-40672925)
	1-333, gnl\|loxAfr1\|scaffold_9361 (27701-28215)
	1-333, gnl\|mm7\|chr15 (82340338-82340840)
	1-333, gnl\|Mm7\|chr15 (82340448-82340780)
	1-333, gnl\|monDom2\|scaffold_555 (8583-8070)
	1-333, gnl\|oryCun1\|scaffold_181385 (31431-31930)
	1-333, gnl\|panTro1\|chr23 (40942184-40942703)
	1-333, gnl\|rheMac2\|chr10 (85913986-85914506)
	1-333, gnl\|rn3\|chr7 (120663376-120663874)